Input parameters:

  Query = ENSDARP00000078963 (Len=922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000078963, Len=922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQKKKDPLLVECQPDSKDETMVPVLTSKKASELPVNEVACALQADLQFGLNREEVERRRTYHGWNEFDISEDEPLWKKYL 80  
WD40-rpts                                                                                      

Query       81 SQFKDPLILLLLSSAVISVLMRQFDDAVSITVAIIIVVTVAFVQEYRSEKSLEELGKLVPPECHCIREGHLEHLLARELV 160 
WD40-rpts                                                                                      

Query      161 PGDTVCLSVGERVPADLRLFESTDLAVDESSLTGETTPCTKTSAPQPAATNGDIASRSNIAFMGTLVRCGKAKGIVIGTG 240 
WD40-rpts                                                                                      

Query      241 EDSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSLYSLGIIGVIMFVGWLQGKYILDMFTIGVSLAVAAIPEGLPIVVTV 320 
WD40-rpts                                                                                      

Query      321 TLALGVMRMVKKRAIVKKLPIVETLSCCNVICSDKTGTLTKNEMTVTHLFTSDGQHAEVTGIGYNNSGEILMDGEVVHGI 400 
WD40-rpts                                                                                      

Query      401 SNTSISKIVEVGCVCNDAMIRHNTLMGRPTEGALIALAMKMGLEGLQHEFVRLEEIPFTSEQKWMAVRVVHRTQRDKPGL 480 
WD40-rpts                                                                                      

Query      481 FYVKGAYEQVIRFCTSYNSKGVTMPLNNQQRDFYQQQKSYMGSGGLRVLAFASGSEMGSLTFLGLVGIIDPPRAGVKEAV 560 
WD40-rpts                                                                                      

Query      561 ATLISSGVAVKMVTGDSEETAVAIASRLGLYTKGSQCLSGDEVDQMDIQHLSQIVHRVVVFYRASPRHKLKIVKSLQNIG 640 
WD40-rpts           (_____________________________________________WD 1_________________________

Query      641 AVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTILSAIEEGKGIYNNIKNFVRFQLSTSIAALTL 720 
WD40-rpts      ___________________)                                                            

Query      721 ISLATLLNFPTPLNAMQILWINIIMDGPPAQSLGVEPVDWDVIRKPPRNVRDSIITRSLIVKILVSAFIIVCGTLFVFWR 800 
WD40-rpts                                                                                      

Query      801 ELRDNEITPRDTTMTFTCFVFFDMFNALSSRSQTRMVHEMGLCSNRMFCYAVLGSIMGQLLVIYFPPLQSVFQTESLSIL 880 
WD40-rpts                                                                                      

Query      881 DLLLLFGLTSSVCVVSEIIKKIERLRCGSEKMSDMDSEFHDV 922 
WD40-rpts                                                

1 WD40-repeats found in QUERY=ENSDARP00000078963 (Len=922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   566-660      3.61  263.71  0.01726       25.0%     21.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  566-660    SGVAVKMVTGDSEETAVAIASRLGLYTKGSQCLSGDEVDQMDIQHLSQIVHRVVVFYRASPRHKLKIVKSLQNIGAVVAMTGDGVNDAVALKAAD

   WD40 Template    TGECLRTLSGHT-----------------SGVTS------VS----------------FSPD-----------GKRLVSGSEDGTIK-----VWD