Input parameters:

  Query = ENSDARP00000078191 (Len=1363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000078191, Len=1363):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMDAELLHSPVLGLAEEEEVDMTDWNLPLAFMKKRHTEKIEGYKALAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKT 80  
WD40-rpts                                                                                      

Query       81 SPCARLECWIDPLSMSPQKALETIGANLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRP 160 
WD40-rpts                                                                                      

Query      161 TVNGEIWVFNKNYTQYIPLSVYDLQTWMGSPSIFVYDCSNAGIIVKSFKQFALQREQELEVAAINPNHPLAQMPLPPSMK 240 
WD40-rpts                                                                                      

Query      241 NCIQLAACDASELLPMNPDLPADLFTSCLTTPIKIALRWFCMQKSAKLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTA 320 
WD40-rpts                                                                                      

Query      321 ITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIE 400 
WD40-rpts                                                                                      

Query      401 EGTAFRHSPFFAEQLTAFQVWLSMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFPYVLK 480 
WD40-rpts                                                                                      

Query      481 LLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPFMPAEHRTMAVFILAVIVNNYNTGQEACLQGNL 560 
WD40-rpts                                                                                      

Query      561 IAICLEQLNDPHPLLRQWVAICLGRIWQNYDSARWCGVRDSAHEKLYSLLSDSIPEVRCAAVFALGTFVGNSAERTDHST 640 
WD40-rpts                                                                                      

Query      641 TIDHNVAMMLAQLINDGSPIVRKELVVALSHLVVQYESNFCTVALQFMEEEKNYAVPSPANSTETGNITPSRDSPAIPRL 720 
WD40-rpts                                                                                      

Query      721 RSVNSYTNLRAATTARTLNKSLQNLNLNEEGGPAAFSPGNLSTSSSASSTLGSPDNDEYLLSFETIDKMRRVSSYSSLNS 800 
WD40-rpts                                                                                      

Query      801 LIGVSFNSVYTQIWRVLLHLAADPFPDVSDLAMKVLNSIAYKATMNARTQRILDSGSLTQSAPASPTSKGTLIHQAGASH 880 
WD40-rpts                                                                                      

Query      881 RSKCSSSPSSGSPPMPGASSSSLTNEVPKPPVRDGPSARPPYTPTLGGQAPHSQQFPRTRKMFDKGPDQTAEDGDETAVH 960 
WD40-rpts                                                                                      

Query      961 RSFVSLSLQTGLCDWSAKYFAQPVMKIPEEHDSESQVRKDREWRFLRNARVRKQSQRITQRGVTRLDDQIFINRNPGVPS 1040
WD40-rpts                                                              (_____________________WD

Query     1041 VVKFHPFNPCIAVADKDSICFWDWEKGERLDYFYNGNPRYTRITAMEYLNGHDCSLLLTATDDGALRIWKNFADQRNPEM 1120
WD40-rpts       1____________________)   (___________________WD 2___________________)          

Query     1121 VTAWQGLSDMLPTTRGLARRVSIYLDRSKQGGAGMVVDWEQETGLLMTSGDVRVIRIWDTEREIKVQDIPTGADSCVTSL 1200
WD40-rpts                               (______________WD 3______________)(___________________W

Query     1201 SCDPQRSLVAAGLGDGSVRVYDRRMGPNECRVMTYREHGAWVVKAHLQKEPEGHIISVSVNGDVRFFDPRMPESVNTLQT 1280
WD40-rpts      D 4__________________)      (_________________WD 5_________________)   (________

Query     1281 VKGLTALDIHPQANLFACGSMNQFIAVHNSNGDVISNIKYYDGFMGQRIGAISCLAFHPFWPHLAVGSNDYYMSIYSAEK 1360
WD40-rpts      ________WD 6________________)  (____________________WD 7____________________)   

Query     1361 RLR 1363
WD40-rpts         

7 WD40-repeats found in QUERY=ENSDARP00000078191 (Len=1363):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9  1017-1063     4.71  309.37  0.00421       17.5%     47.67
  WD 2:  Seg 13  1067-1110     6.29  374.30  0.00056       22.5%     52.76
  WD 3:  Seg 19  1146-1179     6.06  364.81  0.00075       15.0%     45.21
  WD 4:  Seg 22  1180-1222     7.73  433.88  8.8e-05       32.5%     51.59
  WD 5:  Seg 26  1229-1268     6.00  362.53  0.00081       17.5%     43.78
  WD 6:  Seg 29  1272-1309     5.60  345.97  0.00135       25.0%     54.50
  WD 7:  Seg 33  1312-1357     6.22  371.52  0.00061       17.5%     57.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1017-1063   RITQRGVTRLDDQIF---INRNPG-------VPSVVKF-----HPFNP-CIAVADKD-SICFWD
   WD 2 1067-1110   -G--------ERLDY---FYNGNP-------RYTRITAMEYLNGHDCS-LLLTATDDGALRIWK
   WD 3 1146-1179   --------------D---RSKQGG-------AGMVVDW-----EQETG-LLMTSGDVRVIRIWD
   WD 4 1180-1222   TE--------REIKVQDIPTGADS-------CVTSLSC-----DPQRS-LVAAGLGDGSVRVYD
   WD 5 1229-1268   -E--------CRVMT---YREHGA-------WVVKAHL-----QKEPEGHIISVSVNGDVRFFD
   WD 6 1272-1309   -P--------ESVNT---LQTV-K-------GLTALDI-----HPQAN-LFACGSMNQFIAVHN
   WD 7 1312-1357   -G--------DVISN---IKYYDGFMGQRIGAISCLAF-----HPFWP-HLAVGSNDYYMSIYS

   WD40 Template    TG--------ECLRT---LSGHTS-------GVTSVSF-----SPDGK-RLVSGSEDGTIKVWD