Input parameters:

  Query = ENSDARP00000078100 (Len=906)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000078100, Len=906):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 KLSPSHFQVLEWAYGINSTLPVFSLQDEDRLVIIYACAHVAVIYDHTSKSQYLLQGHCSPITCLCTSEDRRWIVTADMGQ 80  
WD40-rpts           (_________________WD 1_________________)  (__________________WD 2__________

Query       81 ESLVIIWDAYTGIPVKTLFDCHPEGGVAALALSKDSKYLVTVGAGLVQRVCIRNWTDESEEPACQVDLSPKYGCQKQILF 160 
WD40-rpts      _______)   (____________________WD 3___________________)(___________________WD 4

Query      161 NPSDSTQLVSNSSSQVLFYNWAQERGHLEYSAPEITDKTFNAVIGSLSQSVFHYDGVQAFTATSDGNIILWDKQTESVSR 240 
WD40-rpts      ___________________)          (__________________WD 5__________________)        

Query      241 QPIVRNAIKLVSMQKEAITVLTLIDSFIVTGDVNGHIKFYDGNLKLINLYNEFNVDPIRSISFSKERPSNNSLEYPKDCT 320 
WD40-rpts      (__________________WD 6_________________)   (_________________WD 7______________

Query      321 LDAKPFVMRNFVLSTTHATVVHVNTQTNVPKSLLREHAEPLEAVACHPKQPLVAMGSHSGTIKVWDYQHKEAVCSRVFLS 400 
WD40-rpts      __)                        (_________________WD 8________________)(_____________

Query      401 HKQIQCIAYDPQGFYLAVGFASGALQIVDACTLHNDGKECLQFTQDSITHLTFSQDSHYLAAADTGKAVTLLCLCKEGTQ 480 
WD40-rpts      ______WD 9__________________)     (_________________WD10________________)       

Query      481 EIWKYQGRHHSHYKPIQDLLFGVDLDSNQPRLLSLGMDRRLVEYDLQSSGENELLILSCDRIEQSAVPTCMAWYPHLTPE 560 
WD40-rpts            (_________________WD11________________)   (_____________________WD12______

Query      561 NFLLTASNLYKMKLFNATSKMCRKTLSAPSYGSPVKKMLILPASKDGDSNSRYMAYITEDKVGIQILPLDGNPHKSFVMI 640 
WD40-rpts      _______________)   (__________________WD13_________________)        (___________

Query      641 CHSTGVSTLACSYDGRYVFTAGGQDCTVFSWELNLLSLEASAALGGKGMKPFYDLLEGGRDGLLFKEMEEYFYYFQLLDQ 720 
WD40-rpts      ________WD14___________________)                                                

Query      721 NLDSMETRLVSTRIPLADVPFLMRALGFYPTEQELEDMQNEVKFSRYAETRNYVTDIDLEEFIRLYVNHRPASGISRQEL 800 
WD40-rpts                                                                                      

Query      801 YNAFQVLGKPDEEGRYNIDRDELLELLQARGEHMTEDDLAECFTTLLGVTPDGGRETPCKPPYSGTNLGSLLESVLPAEI 880 
WD40-rpts                                                                                      

Query      881 TMDAFASDILGFSVATQELHQEHHGQ 906 
WD40-rpts                                

14 WD40-repeats found in QUERY=ENSDARP00000078100 (Len=906):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45       4.98  320.53  0.00298       12.5%     45.03
  WD 2:  Seg  5    48-88       6.84  397.16  0.00028       25.0%     55.63
  WD 3:  Seg  9    92-136      4.11  284.60  0.00906       30.0%     48.86
  WD 4:  Seg 13   137-180      4.62  305.44  0.00475       12.5%     53.14
  WD 5:  Seg 18   191-232      7.37  418.94  0.00014       22.5%     47.09
  WD 6:  Seg 22   241-281      4.07  282.66  0.00962       20.0%     44.65
  WD 7:  Seg 26   285-323      4.04  281.55  0.00996       12.5%     18.38
  WD 8:  Seg 30   348-386      8.42  462.41  3.6e-05       32.5%     56.74
  WD 9:  Seg 34   387-429      6.43  380.31  0.00047       15.0%     58.31
  WD10:  Seg 37   435-473      6.41  379.50  0.00048       15.0%     51.36
  WD11:  Seg 42   487-525      6.88  398.82  0.00026       17.5%     54.67
  WD12:  Seg 46   529-576      3.42  255.89  0.02196       10.0%     39.77
  WD13:  Seg 50   580-620      3.12  243.40  0.03219       27.5%     16.56
  WD14:  Seg 54   629-672      6.55  385.04  0.00040       25.0%     50.48

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     HF---Q----VL--EWA--YG--INSTLPVFSLQD---------ED--------RLVII-YA--CAH----VAVIYD
   WD 2   48-88     -S---K----SQ--YLL--QG--HCSPITCLCTSE---------DR--------RWIVT-ADMGQES----LVIIWD
   WD 3   92-136    -G---I----PV--KTLFDCH--PEGGVAALALSK---------DS--------KYLVT-VG--AGLVQRVCIRNWT
   WD 4  137-180    DE---SEEPACQ--VDL--SP--KYGCQKQILFNP---------SD--------STQLV-SN--SSS----QVLFYN
   WD 5  191-232    SA---P----EITDKTF--NA--VIGSLSQSVFHY---------DG--------VQAFT-AT--SDG----NIILWD
   WD 6  241-281    ----------------Q--PI--VRNAIKLVSMQK---------EAITVLTLIDSFIVT-GD--VNG----HIKFYD
   WD 7  285-323    -K---L----IN--LYN--EF--NVDPIRSISFSK---------ER--------PSNNS-LE--YPK----DCTLDA
   WD 8  348-386    -N---V----PK--SLL--RE--HAEPLEAVACHP---------KQ--------PLVAM-GS--HSG----TIKVWD
   WD 9  387-429    YQ---H-KEAVC--SRV--FL--SHKQIQCIAYDP---------QG--------FYLAV-GF--ASG----ALQIVD
   WD10  435-473    -N---D----GK--ECL--QF--TQDSITHLTFSQ---------DS--------HYLAA-AD--TGK----AVTLLC
   WD11  487-525    -G---R----HH--SHY--KP--IQDLLFGVDLDS---------NQ--------PRLLS-LG--MDR----RLVEYD
   WD12  529-576    -S---G----EN--ELL--IL--SCDRIEQSAVPTCMAWYPHLTPE--------NFLLT-AS--NLY----KMKLFN
   WD13  580-620    -K---M----CR--KTL--SAPSYGSPVKKMLILP---------AS--------KDGDS-NS--RYM----AYITED
   WD14  629-672    LDGNPH----KS--FVM--IC--HSTGVSTLACSY---------DG--------RYVFTAGG--QDC----TVFSWE

   WD40 Template    TG---E----CL--RTL--SG--HTSGVTSVSFSP---------DG--------KRLVS-GS--EDG----TIKVWD