Input parameters:

  Query = ENSDARP00000076812 (Len=1191)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000076812, Len=1191):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYFLSGWPRRLLCPLRSDERPFRIEPSAQRFYLAVLSETQISIWFSRPSVLIVSYIESGKAAAQFGFYQQVEWKPDDSMI 80  
WD40-rpts                                                   (_____________________WD 1_________

Query       81 AVATANGYVLLFDIIGGLDDKYLYEPVYPNKHPAIKVTPGYKEEQCAPALTLEMKKPVDLEAPISCLQSLAEDLLVATAD 160 
WD40-rpts      ____________)                                                                   

Query      161 GFLHMLHWDSVSNGRRAVNLCTIPFSLDLQSSRGGPCLDLDGVYIRDLEYCATLDGFAVVFDDGRIGFITPTANRLATDQ 240 
WD40-rpts                                                                             (________

Query      241 LQGVWAADVTDGTCVAVNNKYRLMAFGCTSGSVLVYMIDSSTGCMQLSHKLELTPKHYPDIWNKTGPVKMIRWSPDCSVA 320 
WD40-rpts      ____________WD 2____________________)                (_________________WD 3_____

Query      321 MVTWECGGLSLWSVFGAHLICTLGEDFACRSDGTKKDPLKISSMSWGVEGYHLWVIRSSDSTVTEEKQEKLQQNTILQFQ 400 
WD40-rpts      ____________)                                                                   

Query      401 FIKSDTRINLCKVNSCQILLQGEDRLYVTCGDPTQTQTPVQRSSSTAPLSQGLSTLLGHKHWQVVQIHSTYLETNWPIRI 480 
WD40-rpts                                                                                      

Query      481 SHFDHVDVGQWQIKERPITHDGACLKSVFCVFQEQNMTVTGGLAWWNDFVVVACYNFIDRQEEVRRVTPRSANLDNAFAS 560 
WD40-rpts                                                                                      

Query      561 ITKLHADTLLLNVFRNMVILFRADCSICLYSIERRHDGPSPSASVELLQEVSMSRYIPHPGLVVSVTLTSVRTESGITLK 640 
WD40-rpts                                                                                      

Query      641 DSDQACSAESILLNLAGQLIMLQRDRSGPQVREKDAPANHSKLLPFCPPVVLAQCVESVWTSSRSNRKKRHLMEALWLSC 720 
WD40-rpts                                                                                      

Query      721 GEAGMKVWLPLFPRDHRKPHSFLSRRIMLPFHINIYPLTVLFEDALILGASNETVLFDGLSSSAEPLEALFPYCTVERTS 800 
WD40-rpts                                                                                      

Query      801 QIYLHHILRQLLVRNLGEQALMLAQSCASLPYFPHVLELMVHVVLEEEATSREPIPDPLLPTVAKFVTEFPLFLQTIVHC 880 
WD40-rpts                                                                                      

Query      881 ARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKA 960 
WD40-rpts                                                                                      

Query      961 IGSGESETPPTTPTTQEQSPSSGFEFFRNRSISLSQSADSIAAGKFNLQKTMSMPTGPSSKSGERWCKDSDSAENLYIDV 1040
WD40-rpts                                                                                      

Query     1041 MLWRHARRLLEQVRLRDLGCFSAQLGFELIGWLCRERTRVARVDDFVTALKCLHKDFLWPFPVIPACTISSPLKNGRCRL 1120
WD40-rpts                                                                                      

Query     1121 LSSRLLKSQSADSLLNSEMDTTPPQVSTANHRWLDGLGAVSKELDSASSHGGPQTQEAFLSPLISKGEQVS 1191
WD40-rpts                                                                             

3 WD40-repeats found in QUERY=ENSDARP00000076812 (Len=1191):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    46-93       5.06  323.75  0.00270       20.0%     47.12
  WD 2:  Seg 15   232-277      3.54  261.04  0.01874       20.0%     44.00
  WD 3:  Seg 19   294-333      6.05  364.49  0.00076       22.5%     32.57

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-93     SRPSVLI------VSYIESGKAAAQFGFYQQVEWKPDDSMIAVATANGYVLLFD
   WD 2  232-277    TANRLATDQLQGVWAADVTD--------GTCVAVNNKYRLMAFGCTSGSVLVYM
   WD 3  294-333    TPKHYPD------IWNKTGP--------VKMIRWSPDCSVAMVTWECGGLSLWS

   WD40 Template    TGECLRT------LSGHTSG--------VTSVSFSPDGKRLVSGSEDGTIKVWD