Input parameters:

  Query = ENSDARP00000069881 (Len=1171)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000069881, Len=1171):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGCLSTWTFLLLLLGITGTISQGTWRGIMGTSWRPNPAVYHNEDNYEWTTWFNVDHPGGKGDYEKLNVIRYYYRARVCEV 80  
WD40-rpts                                                                                      

Query       81 PRALEARTTDWIPARSTGERVHADPAVGFWCVNDEQPFGKNCSNYAVRFLCPRDIVSDVEEGIWGQWSDWSLCPAQCDEE 160 
WD40-rpts                                                                                      

Query      161 ATQHRSRSCQSNSKQCSGKSVEARSCHGPPCPRCDLQCIVGTVNSECDGCMCQDHTVLGSVRSAGGLPAPGAAILRAGSS 240 
WD40-rpts                                                                                      

Query      241 PKLLTVTDHNGHFQVPGICPDGNTTLMVKLSNHAPHQVTVPPSKERTTVLLLRLERAKKLHVLKNPEDRARREGQTAAFC 320 
WD40-rpts                                                                                      

Query      321 CKIDGTPGPSSYEWFHNGTLLDRSQYQYDETLVLRNLSLDHVGEYYCRGSNENGAIKSKPATLTVIGQKEPSCNPRPDSH 400 
WD40-rpts                                                                                      

Query      401 LIRLPHDCFQNETNSLYFDVGRCPTTKCTGKLDNGIRCKDSVSYCCGVSNMEEREITCQGYQLPIMVVTQCGCKTCVDTK 480 
WD40-rpts                                                                                      

Query      481 AIVRGRAVAADTGEPMRFGHIYMDGVKLSRTGYKGTFSIQVPTNTERLVLTFVDNMQKFVNTTKVLPFNPRGGAVFHEVK 560 
WD40-rpts                                                                                      

Query      561 LLRKKPAVIISSRETNTLDLGEVEGQDPVAEIEIPPNAFYKENGEVFMGNVKASVTFLDPRDVSTAAAAQSDLNFIGDEG 640 
WD40-rpts                                                                                      

Query      641 DTLPLRTYGMFSVDFRDEEGGESLNAGEVKVRLDAAQVKMPEHLKTMKLWSLNPETGLWEEEGHFYAEKKQRGKREERTF 720 
WD40-rpts                                                                                      

Query      721 LIGNMEIRERRLFNLDVPENRRCYVKVRAFRSERYMPSEQTEGVVMTLINMEPTPGFSTNPRAWGRFDSVITGPNGACLP 800 
WD40-rpts                                                                                      

Query      801 AFCDEQKPDAYSAYVMANLGGEELEAVASSPKLNPNTIGVPQPYLNKLNYRRTDHDDPRIKKTAFSINVAKPRSNVAEEA 880 
WD40-rpts                                                                                      

Query      881 NGPVYAFDKLKECEEASFSAAHFRFSRVEGDRYDYNTVPFNEDDPMSWTEDYLSWWPKPMEYRACYIKVKLNSPHELNVR 960 
WD40-rpts                                                                                      

Query      961 SRNMGGTHPRTVGQLYGIRDTRSIRDMDQATVSAVCLEFKCSGMLYDQDRVDRTLVKVMPQGSCKRDSVNSMLQEYLVNH 1040
WD40-rpts                         (_________________WD 1_________________)                     

Query     1041 LPLAVNNDTNEFTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTSDGTSRVMKSNEGVALTFTCGDKEVTRQSM 1120
WD40-rpts                                                                                      

Query     1121 FQQIQNSLGQATAGSARPGRGNRRQRGSSTAPRSSQRRSTRNSITRSQSLG 1171
WD40-rpts                                                         

1 WD40-repeats found in QUERY=ENSDARP00000069881 (Len=1171):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 47   980-1019     2.78  229.58  0.04900       15.0%     26.91

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  980-1019   DTRSIRDMDQATVSAVCLEFKCSGMLYDQDRVDRTLVKVM

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD