Input parameters:

  Query = ENSDARP00000068184 (Len=539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000068184, Len=539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLEVESADVIRLIMQYLKENNLHRTLAMLQEETTVSLHTVDSIDSFISDINNGQWDIVLLAIQYLKLPDKLLIDLYEQI 80  
WD40-rpts                                    (_________________________WD 1____________________

Query       81 VLELIELGELGAAQCLLKQTDPMIMLKHTQPERYSRMETLLTHPYFDSQKAYPVGSSKEKRRLAIAQAFAGEVCLVPPSR 160 
WD40-rpts      _____)           (_______________WD 2_______________)   (_________________WD 3__

Query      161 LMGLLGQGRICEGALYRLQETKALRQFGSLAMLSLKWQQHQGLLPPGMSLELFRGKGALKDMEEERFPTQLSRLIKFGPK 240 
WD40-rpts      ______________)   (_________________WD 4________________)(______________________

Query      241 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKICKDLKYQAQDNFMMMDEAVLCLAVSHDSHVIASGAQDGKIQVWRIL 320 
WD40-rpts      _WD 5______________________)           (_________________WD 6________________)  

Query      321 NGTCLNRLERAHSKAVTSVCFNRDSTQLLSSSFDQTIRIHGLKSGKCLKEFRGHTAHVNDVIYSHDGQHVISASADGTVK 400 
WD40-rpts       (_________________WD 7_________________)   (_________________WD 8______________

Query      401 VWTVKTMDCTHTIKTPDIPEGTDITVNNVVLVPKTPEHFVVSNRTNTVVVTNIHGQVMRSFCSGVREGADFVCCTLSPRG 480 
WD40-rpts      __)           (________________WD 9________________)   (__________________WD10__

Query      481 EWIYCVGEDYVLYCFSTITGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 539 
WD40-rpts      _______________)   (_________________WD11________________) 

11 WD40-repeats found in QUERY=ENSDARP00000068184 (Len=539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-86       5.10  325.15  0.00258       15.0%     36.16
  WD 2:  Seg  5    98-133      3.88  275.03  0.01218        7.5%     37.43
  WD 3:  Seg  8   137-175      7.25  414.05  0.00016       10.0%     51.24
  WD 4:  Seg 12   179-217      5.98  361.78  0.00083       10.0%     21.71
  WD 5:  Seg 15   218-268      8.71  474.60  2.5e-05       40.0%     47.34
  WD 6:  Seg 20   280-318      8.38  460.99  3.8e-05       25.0%     47.30
  WD 7:  Seg 23   322-361      8.61  470.31  2.9e-05       42.5%     55.05
  WD 8:  Seg 27   365-403     10.80  560.88  1.7e-06       47.5%     57.09
  WD 9:  Seg 32   415-452      5.96  360.80  0.00085       20.0%     42.79
  WD10:  Seg 35   456-496      6.17  369.40  0.00065       20.0%     56.81
  WD11:  Seg 39   500-538      9.61  511.79  7.9e-06       32.5%     53.48

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-86     QEETTVSLHTVD-----------SIDSFISDINN-GQWDI--VLLAIQYLKLPD----KLLIDLYEQIVLELIE
   WD 2   98-133    ---------------------------------K-QTDPM--IMLK--HTQPERYSRMETLLTHPYFDSQKAYP
   WD 3  137-175    -SKE------KR-----------R--------LA-IAQAF--AGEV--CLVPPS----RLMGLLGQGRICEGAL
   WD 4  179-217    -QET------KA-----------L--------RQ-FGSLA--MLSL--KWQQHQ----GLLPPGMSLELFRGKG
   WD 5  218-268    ALKD------MEEERFPTQLSRLI--------KF-GPKSH--VECA--RFSPDG----QYLITGSVDGFIEVWN
   WD 6  280-318    -YQA------QD-----------N--------FM-MMDEA--VLCL--AVSHDS----HVIASGAQDGKIQVWR
   WD 7  322-361    -GTC------LN-----------R--------LERAHSKA--VTSV--CFNRDS----TQLLSSSFDQTIRIHG
   WD 8  365-403    -GKC------LK-----------E--------FR-GHTAH--VNDV--IYSHDG----QHVISASADGTVKVWT
   WD 9  415-452    TPD--------------------I--------PE-GTDIT--VNNV--VLVPKT---PEHFVVSNRTNTVVVTN
   WD10  456-496    -QVM------RS-----------F--------CS-GVREGADFVCC--TLSPRG----EWIYCVGEDYVLYCFS
   WD11  500-538    -GKL------ER-----------T--------LT-VHEKD--VIGI--AHHPHQ----NLIATYSEDGLLKLWK

   WD40 Template    TGEC------LR-----------T--------LS-GHTSG--VTSV--SFSPDG----KRLVSGSEDGTIKVWD