Accession: ENSDARP00000068125 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000068125 (Len=911)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000068125, Len=911):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFITKKDRSKERFSLLLLDLEEQYFEQHIAYNLTNRGPETNRRTNGSLKICSKSVIFEPDDAVKPILKIPLKDCSEIAA 80  
WD40-rpts                                                                                      

Query       81 VEETAHNPFIESKPACIVIKTKQIYQIKEENVVAPYKYDRGEKKITFQLGSPIKTEDVVQILLQLHRASRLDKQSDQTAM 160 
WD40-rpts                                                                                      

Query      161 IAAILQSRLARTRFDKNSFQNVTELPHMECEAEMVSPLVTNAGHVCITDCNLYFQPLNSYPDSVVQIGLHSVRRIYKRRH 240 
WD40-rpts                                                                                      

Query      241 GLRPLGLEVFCTENDLCSDIYLKFYKTKDRDELYYYIATFLENHVAEHTAESYMLQWQRGHISNYQYLLHLNNLADRSVN 320 
WD40-rpts                                                                                      

Query      321 DLSQYPVFPWVISDYSSTQLDLLNPASFRDLSKPIGALNKERLERLLERYRDMPEPRFMYGSHYSSPGYVLFYLVRVAPE 400 
WD40-rpts                                                                                      

Query      401 HMLCLQNGRFDHADRMFNSIGETWKNCLEGGTDFKELIPEFYGSDSSFLRNLLGLDLGRRQGGGRVENVELPPWASDPDD 480 
WD40-rpts                                                                                      

Query      481 FLQKMCLALESQYVSEHLHEWIDLIFGYKQRGSEAVASHNVFHPLTYEGGVDCDSIEDPDQKIAMLTQILEFGQTPRQLF 560 
WD40-rpts                                                                                      

Query      561 VTPHPQRITPRFYNLSTTPSLSSSELSPVSPCMESFEDLTEESRKMAWSNMNKLVLQSCHKIHKEAVTGVAVTLSGDSIF 640 
WD40-rpts                                                       (___________________WD 1_______

Query      641 TTSQDSTLKMFSKENGLQRSVSFSNMALSSCLMLPDDKIVVCSSWDNNVYFYSIAYGRRQDTLMGHDDAVSDICWRDDKL 720 
WD40-rpts      ___________)(__________________WD 2_________________)   (________________WD 3___

Query      721 YTASWDSTVKVWECVAADISSNKRTQFDPLAEFEHEAGVNTLDLSPAGTLLATGTKEGTLTVWDLASPLPVNQLTCHSGK 800 
WD40-rpts      ____________)(_______________________WD 4______________________)   (____________

Query      801 IHQVAFSPDSRHILSVGEDSCLMVTDVQTGMLIATIPAEQEQRCFCWDGNTVLSGGISGDLSVWNLLNSKVVHKIPAAHS 880 
WD40-rpts      _____WD 5________________)(_________________WD 6________________)(______________

Query      881 GAVTCMWMNEQCSSIITGGLDKQIILWKPQY 911 
WD40-rpts      _____WD 7__________________)

7 WD40-repeats found in QUERY=ENSDARP00000068125 (Len=911):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18   610-652      3.69  266.97  0.01561       25.0%     49.80
  WD 2:  Seg 22   653-693      4.37  295.06  0.00656       25.0%     51.70
  WD 3:  Seg 26   697-733      5.57  344.95  0.00140       35.0%     55.27
  WD 4:  Seg 30   734-784      5.37  336.47  0.00182       32.5%     45.91
  WD 5:  Seg 33   788-826      5.31  333.88  0.00197       30.0%     56.71
  WD 6:  Seg 37   827-865      3.18  246.16  0.02958       20.0%     42.95
  WD 7:  Seg 41   866-908      4.95  319.18  0.00311       17.5%     46.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  610-652    NMNK-----------LVLQSCHKIHKEAVTGVAVTLSGDSIFTTSQDSTLKMFS
   WD 2  653-693    KENG-----------L--QRSVSFSNMALSSCLMLPDDKIVVCSSWDNNVYFYS
   WD 3  697-733    -GRR-----------Q---DTLMGHDDAVSDICWRDD--KLYTASWDSTVKVWE
   WD 4  734-784    CVAADISSNKRTQFDP---LAEFEHEAGVNTLDLSPAGTLLATGTKEGTLTVWD
   WD 5  788-826    -PLP-----------V---NQLTCHSGKIHQVAFSPDSRHILSVGEDSCLMVTD
   WD 6  827-865    VQTG-----------M----LIATIPAEQEQRCFCWDGNTVLSGGISGDLSVWN
   WD 7  866-908    LLNS-----------KVVHKIPAAHSGAVTCMWMNEQCSSIITGGLDKQIILWK

   WD40 Template    TGEC-----------L---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD