Accession: ENSDARP00000065876 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000065876 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000065876, Len=367):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFRPKPTLKDRQHLYKLIISQLLYDGYTIIANSLISEVKPQNVVSPSEQLMQLAKIGMENDDSAVQYAIGRSDTVAPGVG 80  
WD40-rpts        (_________________WD 1_________________)______________________WD 2____________

Query       81 IDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPLEVMMNETAQQNM 160 
WD40-rpts      ____________)(___________________WD 3__________________)                        

Query      161 ENHPVIRTLYDHVDEVTCLSFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHVQEAEMLRSISFHPSGDFLLVGTQHPT 240 
WD40-rpts        (_________________WD 4________________)(___________________WD 5_______________

Query      241 LRLYDVNTFQCFVSCNPLDQHTDTICGVCYNPSANSYVTCSKDGSIKLWDGVSNRCVTTFDKAHEGGKHTALRVFSTTPR 320 
WD40-rpts      ____)        (________________WD 6_______________)   (__________________WD 7____

Query      321 TMCYCRTSGPSACAAGIHAQPRGKTCCHWATTTSCAASYTHPQTPAS 367 
WD40-rpts      ______________)

7 WD40-repeats found in QUERY=ENSDARP00000065876 (Len=367):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       8.07  447.95  5.7e-05       12.5%     40.20
  WD 2:  Seg  2    40-93       3.85  273.72  0.01268       12.5%     29.16
  WD 3:  Seg  6    94-136      8.87  481.03  2.0e-05       25.0%     52.03
  WD 4:  Seg 10   163-201      8.69  473.83  2.6e-05       42.5%     54.53
  WD 5:  Seg 14   202-245      8.13  450.65  5.2e-05       22.5%     52.26
  WD 6:  Seg 19   254-290      9.39  502.52  1.0e-05       32.5%     39.97
  WD 7:  Seg 22   294-335      5.56  344.46  0.00142       15.0%     56.15

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     RPK----P---TLKDR---------QHLYK---LIISQLL-YDGYTIIAN-----SLISEVKPQN
   WD 2   40-93     -PQ----N---VVSPSEQLMQLAKIGMEND---DSAVQYAIGRSDTVAPGVGIDLEFDADVQTMS
   WD 3   94-136    PEA----SEYETCYVT---------SHKGP---CRVATYS-RDGQLIATG-----SADASIKILD
   WD 4  163-201    -HP----V---IRTLY---------DHVDE---VTCLSFH-PTEQILASG-----SRDYTLKLFD
   WD 5  202-245    YSKPSAKR---AFKHV---------QEAEM---LRSISFH-PSGDFLLVG-----TQHPTLRLYD
   WD 6  254-290    -------S---CNPLD---------QHTDT---ICGVCYN-PSANSYVTC-----SKDGSIKLWD
   WD 7  294-335    -NR----C---VTTFD---------KAHEGGKHTALRVFS-TTPRTMCYC-----RTSGPSACAA

   WD40 Template    TGE----C---LRTLS---------GHTSG---VTSVSFS-PDGKRLVSG-----SEDGTIKVWD