Input parameters:

  Query = ENSDARP00000065646 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000065646, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSFFIKKKLVSSATNKGDLKRKSNTDDGKGRSKRFSKRMNEEISSDSENESADPGRKQQENEEDEIEETAQEKKLRLAK 80  
WD40-rpts                                                                                      

Query       81 LYLDQLREEEDKKAEEESFEADLIAGRLQEDVLEQKGKLQRLIAKELKAPDPAEIRLLRGHKLPVTCLVITPDEKHIFSA 160 
WD40-rpts                                                         (_________________WD 1_______

Query      161 SKDCSIIKWDVESGKKVQKIAGGRKGTEDCHTAHILCMAISSDGKYLASGDMNKHIMIWDPETCKHLFKFTGHRGAISGL 240 
WD40-rpts      _________)          (_________________WD 2_________________)   (________________

Query      241 AFRRGTHTLYSASHDRSIKVWSVDENAYVETLFGHQDAITGLDCLSRERCVTTGGRDRTVRVWKIAEESQLVFHGHEGSI 320 
WD40-rpts      _WD 3________________)   (_________________WD 4________________)(_______________

Query      321 DCVQLINEEHMVTGGDDGAVSIWTVNKKKPLSSVKQAHGVRGSAGLEQPYWVSSVAALHNSDTVASGASGSHNSSVQLWK 400 
WD40-rpts      __WD 5_________________)              (__________________WD 6__________________)

Query      401 CGQGFRGLELLFSVPVNGFVNSLKFSNSGKFLVAGVGQEHRLGRWWRIKEAKNGLYIIPLKRQAKEQEVVQ 471 
WD40-rpts      (_____________________WD 7____________________)                        

7 WD40-repeats found in QUERY=ENSDARP00000065646 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   132-170      9.32  499.60  1.1e-05       37.5%     51.41
  WD 2:  Seg  6   181-220     10.67  555.40  2.0e-06       35.0%     39.86
  WD 3:  Seg  9   224-262      9.48  506.42  9.3e-06       30.0%     54.07
  WD 4:  Seg 13   266-304      9.50  507.25  9.1e-06       25.0%     53.67
  WD 5:  Seg 17   305-344      7.50  424.32  0.00012       22.5%     55.07
  WD 6:  Seg 22   359-400      6.12  367.40  0.00070       20.0%     34.55
  WD 7:  Seg 25   401-447      6.26  373.23  0.00058       32.5%     52.12

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  132-170    -PA-E-----IRLLRGHKLPVTCLVITPDEKHI---FSAS--KDCSIIKWD
   WD 2  181-220    AGG-R-----KGTEDCHTAHILCMAISSDGKYL---ASGD--MNKHIMIWD
   WD 3  224-262    -CK-H-----LFKFTGHRGAISGLAFRRGTHTL---YSAS--HDRSIKVWS
   WD 4  266-304    -NA-Y-----VETLFGHQDAITGLDCLSRERCV---TTGG--RDRTVRVWK
   WD 5  305-344    IAEES-----QLVFHGHEGSIDCVQLINEE-HM---VTGG--DDGAVSIWT
   WD 6  359-400    -GV-R-----GSAGLEQPYWVSSVAALHNSDTVASGASGS--HNSSVQLWK
   WD 7  401-447    CGQ-GFRGLELLFSVPVNGFVNSLKFSNSGKFL---VAGVGQEHRLGRWWR

   WD40 Template    TGE-C-----LRTLSGHTSGVTSVSFSPDGKRL---VSGS--EDGTIKVWD