Input parameters:

  Query = ENSDARP00000063641 (Len=439)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000063641, Len=439):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFAAIFALSLLIGALVVLVAVAVGRQKGELSEQKKDSPGEENTAKAPSRKQKQQQQQQRPRKERPQQHTFTHQLLASAL 80  
WD40-rpts                                                                                     (

Query       81 KSHSGHVTCLDFSSNGKYLASCSDDRTIRIWSTKDFLDRDHKCLRANIEFDHATLVRFSPDSRAFITWLANGETIRIYKM 160 
WD40-rpts      ______________WD 1_____________)       (_________________WD 2_________________) 

Query      161 VKKDDGTFNFKAAPGDFPQKHKGVIINIGIAETGKFIMSASVDTTIVIWDLKGEVLATINTNQMTNSHAAVSPCGRFVAS 240 
WD40-rpts                 (_________________WD 3________________)  (_________________WD 4______

Query      241 CGFTPDVKVWEVCFGKSGEFREVARAFDLKGHSAGVYSFDFSNDSRRMVTVSKDGTWKLWDTDVEYKKKQDPYLLRTVPC 320 
WD40-rpts      __________)           (_________________WD 5________________)          (________

Query      321 KVSEGSRIALSPDGRVVAISNVCDIAMYNATTGELEEEFHSVHNGEITDLKFDINNRFLLSTGDRVIRVFHNVTGYRAAI 400 
WD40-rpts      ________WD 6________________)   (_________________WD 7________________)         

Query      401 QDMQTMLKKASNDGVRQRLRQQITDAQSALDTVLNAAKN 439 
WD40-rpts                                             

7 WD40-repeats found in QUERY=ENSDARP00000063641 (Len=439):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    80-112      8.78  477.20  2.3e-05       37.5%     45.39
  WD 2:  Seg  4   120-159      7.37  419.24  0.00014       20.0%     53.61
  WD 3:  Seg  8   172-210      8.48  464.79  3.4e-05       25.0%     40.44
  WD 4:  Seg 11   213-251      9.45  504.83  9.8e-06       27.5%     55.21
  WD 5:  Seg 15   263-301      9.67  513.98  7.3e-06       45.0%     47.46
  WD 6:  Seg 18   312-349      7.00  403.85  0.00022       22.5%     50.03
  WD 7:  Seg 22   353-391      6.45  381.01  0.00046       27.5%     51.38

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   80-112    ------L-KSHSGHVTCLDFSSNGKYLASC-SDDRTIRIWS
   WD 2  120-159    DHKCLRA-NIEFDHATLVRFSPDSRAFITWLANGETIRIYK
   WD 3  172-210    AAPGDFP-QKHKGVIINIGIAETGKFIMSA-SVDTTIVIWD
   WD 4  213-251    GEVLATI-NTNQMTNSHAAVSPCGRFVASC-GFTPDVKVWE
   WD 5  263-301    VARAFDL-KGHSAGVYSFDFSNDSRRMVTV-SKDGTWKLWD
   WD 6  312-349    PYLLRTV-PCKVSEGSRIALSPDGRVVAIS-N-VCDIAMYN
   WD 7  353-391    GELEEEFHSVHNGEITDLKFDINNRFLLST-G-DRVIRVFH

   WD40 Template    GECLRTL-SGHTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD