WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000061333 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000061333 (Len=1745) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000061333, Len=1745): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQLKYMKTLLTPQDGAAKVTCMAWAPNNAKFAVCTIDRVVILYDEQGEKRDRFTTKPADPKYGKKTYVVKSMAFSPDSTK 80
WD40-rpts (_________________WD 1_________________) (___________________WD 2_____
Query 81 IAVAQTDNIIFVYKIGEEWGDKKVICNKFIQTSAVTSLVWPSEHAIIFGLAEGKVRQANTKTSKSSTIYGTDSYVVSLTS 160
WD40-rpts _____________)(____________________WD 3___________________) (_________________W
Query 161 NVSGKGILSGHADGTVVRYFIDDEGSGESQGKLLTHACPPYALAWGTNSIIVAGCDKKIVAYGKEGNVIQTFDYSRDRAE 240
WD40-rpts D 4________________) (________________WD 5_______________) (__________
Query 241 KEFTVAASSPSGQSIVVGSFDRLRVFNWSPRKGTWDESSPKEIPNLYTITALSWKKDGSRLSVGTLCGGVEMFDCCLRRS 320
WD40-rpts ______WD 6________________)(_____________________WD 7____________________)
Query 321 IYKNKFEMTYVGLSQVIVRNLSTGTRVVLKSQYGYEIDEVKVMGKDQYLVAHTSDTLLLGDLVSNKLSEVAWQGSGGNEK 400
WD40-rpts (______
Query 401 FFFENETVCMIFNAGELALVEYGSNDILGSVRTEFMNPHLISVRLNERRQRGVEDNKKLAYLIDIKTIAIVDLVGGYNLG 480
WD40-rpts ___________WD 8_________________)(_________________WD 9________________) (_____
Query 481 TISHDSKIDWLELNETGRKLLFRDKKLRLHLYDIESSVKSTMLSFCPYVQWVPGSDVVVAQNRGNLCVWYTIDSPERVTM 560
WD40-rpts ____________WD10________________)
Query 561 FPLKGDIVDLERSNGKTEVIVNEGVNSISYTLDEGLIEFGTAIDDGDYYRATAFLETLEMSAETEAMWKTLSKLSLEAQQ 640
WD40-rpts
Query 641 LHIAERCFAALGDVSKARFLNETNKIADAVAKEYDGDGTDHYQVKARLAMLDKNFKLAEMYYMEQNAVDEVMEMYQELHM 720
WD40-rpts
Query 721 WDECIAVAEGKGHPELDNLRRSYYSYLMETNQNEKAAEVKENEGDFTGAVNLYLKAGLPAKAAWLAMSKDELLSSQDIVS 800
WD40-rpts
Query 801 RITAALIKGEFYERAGDLFERTRNNQRALECYRKGNAFKKAVDLARVAFPAEVVKLEEVWGDYLVQQKQMDAAINHYIEA 880
WD40-rpts
Query 881 GRSIKAIEAAIAARQWKKALHILELQEDRTAAKYYLKIAQYYASVQEFEVAERLFVKGDHIKDAIDMYTQAGRWEQAHKL 960
WD40-rpts
Query 961 AVKCMTQEDVSVLYVSRAQELEKEGKYKEAERLFTTVDEPDLAITMYKKNKMYDDMIRLVAVHHKDLLQETHIHLAKELE 1040
WD40-rpts
Query 1041 AESRFQEAEYHYLEGQDWKAAVNMYRVNDMWEEAYRIAKTHGGANAHKQVAYLWAKSLGGEAAVKLLNKFGLLETAIDFA 1120
WD40-rpts
Query 1121 ADNYTFDFAFELARLSMKQKIPDIHLKNAMFLEDQGKFNEAEIEFIKAGKPKEAVLMHVHNKDWSNAQRVAEAHDPESVA 1200
WD40-rpts
Query 1201 DILVSQAKFCFDQKEFQKAEAFLLRAQRPELAIKYYKDAGMWTDAMRICKDYLPSKLSVLQKEYESEGNWGVEGMIEQAQ 1280
WD40-rpts
Query 1281 EWEQTGEYSRAVDCYLKVKDSSNLDLLLKCWMKAAELAIKFLSHDKAVDVSQIVGPRLIQLRKYNEAAELYLNLDLIKNA 1360
WD40-rpts
Query 1361 IDAFIEGEEWNKAKRVAKELDPRLEEYVDKRYKEHLKNQGKVDSLVGVDVVAALDMYAERGQWEKCIDTASKQNFKVLHK 1440
WD40-rpts
Query 1441 YIALYATHLIKEGEVEKVLSLYIQHGVPAYSQNFNIYKRMFQELVNLRDRDCAEAFRMWSDLRDVLLLLCENLTKSSEAN 1520
WD40-rpts
Query 1521 SPAHEEFEQMLLVAHYYATRSAAKGIDQLSSVAAKLSISLLRHTELIPADKAFYEAGLAAKAVGWENMAFIFLNRFLDLA 1600
WD40-rpts
Query 1601 DGIDEGTLDALDHTDFQDTDIPFEVPVPSRLHVTVEKREEIREWVLTVSMDQRVEQVLPKDERGTYEASLVAASTGIRSL 1680
WD40-rpts
Query 1681 PCVITGYPVLRNKIEFKRPGMAANKDDWNKFLMATKTTHSPECQDVLKFITQWCGGLPSAGYSFH 1745
WD40-rpts
 10 WD40-repeats found in QUERY=ENSDARP00000061333 (Len=1745): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-44 6.26 373.38 0.00058 17.5% 47.60 WD 2: Seg 5 52-94 6.39 378.45 0.00049 25.0% 39.48 WD 3: Seg 8 95-139 4.73 309.91 0.00414 25.0% 48.43 WD 4: Seg 12 142-180 6.79 395.00 0.00030 30.0% 48.44 WD 5: Seg 16 187-223 4.27 290.89 0.00746 15.0% 47.70 WD 6: Seg 20 230-267 3.55 261.41 0.01853 22.5% 45.68 WD 7: Seg 24 268-314 5.95 360.24 0.00087 25.0% 42.81 WD 8: Seg 35 394-433 4.14 285.75 0.00875 12.5% 29.44 WD 9: Seg 38 434-472 3.96 278.17 0.01105 17.5% 34.77 WD10: Seg 42 475-513 4.90 317.15 0.00331 15.0% 53.17Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-44 YM-------K------TL---LTPQDGAAKVTCMAWAPNNAKFAVCTIDRVVILYD WD 2 52-94 RF-------T------TKPADPKYGKKTYVVKSMAFSPDSTKIAVAQTDNIIFVYK WD 3 95-139 IG-------EEWGDKKVI---CNKFIQTSAVTSLVW-PSEHAIIFGLAEGKVRQAN WD 4 142-180 -T-------S------KS---STIYGTDSYVVSLTSNVSGKGILSGHADGTVVRYF WD 5 187-223 -G-------E------SQ---GKLLTHACPPYALAWGTNS--IIVAGCDKKIVAYG WD 6 230-267 -Q-------T------FD---YSRDRAEKEFTVAASSPSGQSIVVGSFD-RLRVFN WD 7 268-314 WSPRKGTWDE------SS---PKEIPNLYTITALSWKKDGSRLSVGTLCGGVEMFD WD 8 394-433 GS-------G------GN---EKFFFENETVCMIFNAGELALVEYGSNDILGSVRT WD 9 434-472 -E-------F------MN---PHLISVRLNERRQRGVEDNKKLAYLIDIKTIAIVD WD10 475-513 -G-------G------YN---LGTISHDSKIDWLELNETGRKLLFRDKKLRLHLYD WD40 Template TG-------E------CL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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