Input parameters:

  Query = ENSDARP00000060193 (Len=1285)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000060193, Len=1285):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLIKEYRIPMPLSVEEYRIAQLYMIQQKKSREESEGEGSGVEILENRPYTDGPGGSGQYTRKVYHIGQHIPSWFRSILPK 80  
WD40-rpts                                                                                      

Query       81 AALRVEEESWNAYPYTRTRCRHTCPFVEKFSIDIETYYKPDTGSQNDVFNLSSAEKRQRDIDPIDIVKDFIAPHEYLVEE 160 
WD40-rpts                                                                                      

Query      161 DPKLYKSNKTQRGPLSDDWITEINNNPGKTPVMCAYKLCKVEFRYWGMQSKIERFIHDNIGVSQVMVRAHRQAWCWQDEW 240 
WD40-rpts                                                                                      

Query      241 YGLTMEDIRQLELETQLALAQKMAQYSEEAEGGGAPCGQQKESEEPAESRGSRVEADGEARSGGDTLQARGELTKQWSTS 320 
WD40-rpts                                                                                      

Query      321 SRSSRSSKRGAGSPSRHSISEWRMQSIARDSEDSTDDEFFDAHEDFSDNEEIFAKEITKWSSNDLMDKIETAEAEEAQED 400 
WD40-rpts                                                                                      

Query      401 LFQESGGEFSGTTGVERLHEVLNVLCQCMLGAMGECGMSLLPSTAAKTSKTSLSTVKSDSDAQCVLKISTAEVHSPKNTE 480 
WD40-rpts                                                                                      

Query      481 LCFLMINHHLNIVCRVRHNLLYFSPRVRINTESVNLIIFTLFILIITKFESKSPSKSTTFLHDGDIRNEVKQSVSINRFS 560 
WD40-rpts                                                                                      

Query      561 YCVCWRQKIPTHLQICSEYRFTDTHFTTTHDTSTAAWEFFLQDSELLSPGIIINCSGSGGSSNSALSLEGSRHLSRSNID 640 
WD40-rpts                                                                                      

Query      641 IPRCSAADEHKKQLPRKRSDSSTYEIDTIKQHQTEVHSSVLRTDPASRRSSSSTMLEGGGALGKFDFEVSDFFLYGQDSS 720 
WD40-rpts                                                                                      

Query      721 ISSVSSFFIIGGFDIFTLRPACQQVYNLFHPADPSASRLEPLLEKRFHLMPPFSVPRYQRFPLGDGQSALCALLSTADVM 800 
WD40-rpts                                                                                      

Query      801 QSHGLMFSEHSNPSSPAAIPAFRGARRASETSIASQVSGLADSYTASNIANSEYTVMCRGNAASRLVVRSVCEPLELTAS 880 
WD40-rpts                                                                                      

Query      881 PSCRAKVSLSRKLSVLSEVCVRYSKRSSRCVCAQPDTADQSGAEPPLDLQSTAHSCADSFHIVPHCFNHTDSSILELDGK 960 
WD40-rpts                                                                                      

Query      961 EVSEFTPSKPREKWIRKRTHVKIRNVTANHRVNDAVFTEDGNQVVTGRFMYGPLDMVTLTGEKTTHKHIMTQPPSGEWVY 1040
WD40-rpts                                                         (_________________WD 1_______

Query     1041 FSTELTNSSGRVFYEIPDSKRLSIGVYPVNWQDLGYLIVYVTGRPDMQKQRVVAWLSQHNFPHGIVSFCDGLVHDPLRHK 1120
WD40-rpts      __________)                                                                     

Query     1121 ANFLKTLVTEAHMKIFAAYGSTKDISVYTSLGLPPAQIYIVGRPTKKMQHQCQQFITDGYASHLSQLEYNQRSRPAKTGS 1200
WD40-rpts                                                                                      

Query     1201 TRMVLRKGSFGLGSGDFLRKRNHLLRTISSQPSPTTPLPAARPERAQSQSECDRERAERAQRSMSIAAGCWGRSTKLEGG 1280
WD40-rpts                                                                                      

Query     1281 ALSPK 1285
WD40-rpts           

1 WD40-repeats found in QUERY=ENSDARP00000060193 (Len=1285):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19  1012-1051     3.16  244.99  0.03066       17.5%     44.58

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1012-1051   GPLDMVTLTGEKTTHKHIMTQPPSGEWVYFSTELTNSSGR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD