Input parameters:

  Query = ENSDARP00000056884 (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000056884, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGYQGKKNIPRITSDRLLIKGAKIVNDDQSFHADIYMEDGVIKQIGENLIVPGGVKIIEAHGRMLIPGGIDVHTRFQMP 80  
WD40-rpts                                                                                      

Query       81 DRGMTAADDFYQGTRAALAGGTTMIMDHVVPEPGFSLISAFNQWREWADQKSCCDYSLHVDITEWHKGLQEEIEMLVKDH 160 
WD40-rpts                                                                                      

Query      161 GVNSFLVYLAYKDIFQLNDSQMYEVFSVIRDLGAIAQVHAENGDIIAEEQKRILGLGITGPEGHVLSRPEEVEAEAVNRA 240 
WD40-rpts                                                                                      

Query      241 VTIANQTNCPLYITKVMSKSAADVIAQARKKGTVVYGEPISASLGTDGTHYWSKNWAKAAAFITSPPLSPDPTTPDYLNS 320 
WD40-rpts                                                                                      

Query      321 LLACGDLQVTGSAHCTFNTSQRAVGKDNFTFIPEGTNGTEERMSIIWDKCVVTGKMDENQFVLVTSTNAAKIFNLYPRKG 400 
WD40-rpts         (___________________________________________WD 1_____________________________

Query      401 RIAVGSDADLVLWDPDATKIISAKSHHLAVEYNIFEGMEVRGAPLVVISQGKVVLEEGNLHTTEGSGRYISRKPFPDYVY 480 
WD40-rpts      _____________)                                                                  

Query      481 KRIKARSRLAELRGVPRGLYDGPVCEVTVTPKVMTPVTSGKTSPVKPAPQPVRNLHQSGFSLSGAQVDDNVPRRTTQRIV 560 
WD40-rpts                                                                                      

Query      561 APPGGRANITSLG 573 
WD40-rpts                   

1 WD40-repeats found in QUERY=ENSDARP00000056884 (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   324-414      4.47  299.32  0.00575       25.0%     14.77

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  324-414    CGDLQVTGSAHCTFNTSQRAVGKDNFTFIPEGTNGTEERMSIIWDKCVVTGKMDENQFVLVTSTNAAKIFNLYPRKGRIAVGSDADLVLWD

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKR------------------LV-------------------------SGSEDGTIKVWD