Input parameters:

  Query = ENSDARP00000056762 (Len=777)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000056762, Len=777):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLKTSLLKEPKHRELVSCVGWTSADELYSCSDDHQILKWNLLSNDTSVVVKLQDEIYPIDLHWFPKTVSGKKQAAAEIF 80  
WD40-rpts           (_______________WD 1_______________)           (__________________WD 2_____

Query       81 ALTSSDGKLHLVSKSGRIEKSVEAHRGAVLAGRWNYDGTALITAGEDGQLKIWSKSGMLRSTLAQQGMPVYSVAWAPDSG 160 
WD40-rpts      ____________)  (_________________WD 3________________)  (_________________WD 4__

Query      161 RVLYTSGRQLVVKPLQPNSKVLQWKAHDGVILKVDWSAVNDLILSGGEDCKYKVWDSYGRLLFSSAPHDYPITSVAWAPD 240 
WD40-rpts      _______________)(_________________WD 5_________________)  (________________WD 6_

Query      241 GELFAMGSFHTLRLCDKTGWSYSLEKPSTGSLLSLCWSADGTQLAGACGNGHVLFAHIVEQRWEWKNFEITLTKRRTMQV 320 
WD40-rpts      _______________)  (_________________WD 7________________) (______________WD 8___

Query      321 RNVLNDAVDVLEFRDRVIKASLAHGHLVVTTSLQCYVYSAKNWNTPLIFDLKEGTVSLIVQAERHFLLVDGAEVYVYSYE 400 
WD40-rpts      ___________)(________________WD 9________________)                              

Query      401 GRLISSPKSPGMRMDILNSQSISLSNDTIAIRDTTDERVVFLFEAQTGKAIGDGKPLIHKIEVVLIALDQCGSSNDRRIA 480 
WD40-rpts       (___________________WD10__________________)     (___________________WD11_______

Query      481 LIDKNRDLYLTSVRKLGRAHSIYKIGSMVDTMAWNDSANILCGIQDNRFTVWYYPSVVFVDKDLLPKTIFTKDSSEFSRP 560 
WD40-rpts      ___________)   (________________WD12________________)(___________________WD13___

Query      561 PQMVSYVGSQVTVRRVDGSLVCTAVSPYPTLLHEYTSSARWEDALRICRFAKDQTLWSCLAGLAMANRELSTAEVAYAAI 640 
WD40-rpts      ________________)(______________________WD14______________________)             

Query      641 GEIDKVQYINFIKDLPSKDSCLAHILLFSGHVQEAEATLLQANLIYHAIQIHINLYNWDRALELAVKYKTHVDTVLAHRH 720 
WD40-rpts                                                                                      

Query      721 KFLQDFGKQETNKRFLQYSEGVEVDWEKIQAKIEMEFAKERERAANSSVRSSVSVRR 777 
WD40-rpts                                                               

14 WD40-repeats found in QUERY=ENSDARP00000056762 (Len=777):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-41       5.84  355.93  0.00099       25.0%     46.33
  WD 2:  Seg  5    53-93       5.00  321.10  0.00293       12.5%     43.27
  WD 3:  Seg  8    96-134      9.24  496.51  1.3e-05       27.5%     55.22
  WD 4:  Seg 12   137-176      5.65  348.09  0.00127       27.5%     44.62
  WD 5:  Seg 16   177-216     10.12  532.73  4.1e-06       27.5%     55.51
  WD 6:  Seg 20   219-256      7.53  425.51  0.00011       32.5%     54.54
  WD 7:  Seg 24   259-297      7.49  424.12  0.00012       20.0%     58.59
  WD 8:  Seg 28   299-332      3.64  264.84  0.01667        5.0%     40.24
  WD 9:  Seg 31   333-370      3.73  268.80  0.01476       12.5%     38.04
  WD10:  Seg 38   402-444      5.45  339.92  0.00163       12.5%     32.38
  WD11:  Seg 42   450-492      4.53  301.85  0.00531       12.5%     45.12
  WD12:  Seg 45   496-533      5.51  342.46  0.00151       15.0%     52.06
  WD13:  Seg 49   534-577      5.43  339.06  0.00168       15.0%     39.89
  WD14:  Seg 52   578-627      3.98  279.13  0.01073       15.0%     26.57

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-41     ------SL----LKEPK---H-RELVSCVGWTSAD----E--LYSCSDDHQ-------ILKWN
   WD 2   53-93     LQ---DEI----YPIDL---HWFPKTVSGKKQAAA----EI-FALTSSDGK-------LHLVS
   WD 3   96-134    -G---RIE----KSVEA---H-RGAVLAGRWNYDG----TA-LITAGEDGQ-------LKIWS
   WD 4  137-176    -G---MLR----STLAQ---Q-GMPVYSVAWAPDS----GRVLYTSGRQLV-------VKPLQ
   WD 5  177-216    PN---SKV----LQWKA---H-DGVILKVDWSAVN----DL-ILSGGEDCK-------YKVWD
   WD 6  219-256    -G---RLL----FSSAP---H-DYPITSVAWAPDG----EL-FAMGSFH-T-------LRLCD
   WD 7  259-297    -G---WSY----SLEKP---S-TGSLLSLCWSADG----TQ-LAGACGNGH-------VLFAH
   WD 8  299-332    VE---Q----------R---W-EWKNFEITLTKRR----TM-QVRNVLNDA-------VDVLE
   WD 9  333-370    FR---D------RVIKA---S-LAHGHLVVTTSLQ----CY-VYSAKNWNT-------PLIFD
   WD10  402-444    RL---ISS----PKSPGMRMD-ILNSQSISLSNDT----IA-IRDTTDERV-------VFLFE
   WD11  450-492    AI---GDG----KPL-I---H-KIEVVLIALDQCGSSNDRR-IALIDKNRD-------LYLTS
   WD12  496-533    -L---GRA----HSIYK---I-GSMVDTMAWNDSA----N--ILCGIQDNR-------FTVWY
   WD13  534-577    YP---SVVFVDKDLLPK---T-IFTKDSSEFSRPP----QM-VSYVGSQVT-------VRRVD
   WD14  578-627    GSLVCTAV----SPYPT---L-LHEYTSSARWEDA----LR-ICRFAKDQTLWSCLAGLAMAN

   WD40 Template    TG---ECL----RTLSG---H-TSGVTSVSFSPDG----KR-LVSGSEDGT-------IKVWD