WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000056247 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000056247 (Len=677) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000056247, Len=677): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATLHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVND 80
WD40-rpts (________________WD 1_______________)(____________________W
Query 81 IILCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVT 160
WD40-rpts D 2___________________) (_________________WD 3________________) (__
Query 161 TSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG 240
WD40-rpts _______________WD 4________________) (_________________WD 5________________)(_
Query 241 QQRCIATYRVHDEGVWALQVNEAFTHIYSGGRDRKIYCTDLRNPDMRVLICEEKAPVLRMELDRSADPPQSIWVSTTKSF 320
WD40-rpts _________________WD 6__________________) (_________________
Query 321 VNKWSLKAMHNFRASGDYDNDCSAPLTPLCTQPEQVIKGGTSIVQCHILNDKRHILTKDTNNSVAFWDVLKACKGEDLGK 400
WD40-rpts __WD 7___________________) (_________________WD 8________________)
Query 401 VDFDEEVKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVAAKDAGFTSPDGSDPKLNLGGLLLQALLEFWPRTHIN 480
WD40-rpts (______________________WD 9_____________________)
Query 481 PMEEEENELNHVNGEQESRIQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMP 560
WD40-rpts (___________________WD10___________________)
Query 561 KFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDTESQATSSSANDKPGEQEKEEDVSVMAEEKIE 640
WD40-rpts
Query 641 LMCLDQVLDPNMDLRTVKHFIWKSGGDLTIHYRQKST 677
WD40-rpts
 10 WD40-repeats found in QUERY=ENSDARP00000056247 (Len=677): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 22-58 8.08 448.38 5.6e-05 22.5% 47.88 WD 2: Seg 5 59-103 8.99 486.14 1.7e-05 32.5% 52.79 WD 3: Seg 9 107-145 9.21 495.21 1.3e-05 30.0% 55.66 WD 4: Seg 13 158-196 8.57 468.83 3.0e-05 27.5% 46.15 WD 5: Seg 16 200-238 9.96 526.20 5.0e-06 42.5% 54.80 WD 6: Seg 20 239-280 8.39 461.23 3.8e-05 27.5% 55.52 WD 7: Seg 26 303-346 4.31 292.50 0.00710 17.5% 21.73 WD 8: Seg 29 350-388 5.73 351.49 0.00114 7.5% 47.89 WD 9: Seg 36 427-475 5.06 323.53 0.00271 22.5% 33.63 WD10: Seg 39 507-550 3.09 242.45 0.03313 12.5% 10.43Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 22-58 RDE--------V----EKYNRNGVNALQLDPALNRLFTAGRDSIIRI-----------WS WD 2 59-103 VNQHKQDPYIAS----MEHHTDWVNDIILCCNGKTLISASSDTTVKV-----------WN WD 3 107-145 -GF-----CMST----LRTHKDYVKALAYAKDKELVASAGLDRQIFL-----------WD WD 4 158-196 -TV-----TTSS----LSGNKDSIYSLAMNQTGTVIISGSTEKVLRV-----------WD WD 5 200-238 -CA-----KLMK----LKGHTDNVKSLLLNRDGTQCLSGSSDGTIRL-----------WS WD 6 239-280 LGQ---QRCIAT----YRVHDEGVWALQVNEAFTHIYSGGRDRKIYC-----------TD WD 7 303-346 DRS-----ADPPQSIWVSTTKSFVNKWSLKAMHNFRASGDYDNDCSA-----------PL WD 8 350-388 -CT-----QPEQ----VIKGGTSIVQCHILNDKRHILTKDTNNSVAF-----------WD WD 9 427-475 -GM-----LTIT----LDESDCFAAWVAAKDAGFTSPDGS-DPKLNLGGLLLQALLEFWP WD10 507-550 FQV-----PPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQ-----------WV WD40 Template TGE-----CLRT----LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKV-----------WD |
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