Input parameters:

  Query = ENSDARP00000054201 (Len=225)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000054201, Len=225):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSRRRRCKRQLIKFTQHIARLITGTLNTDNEDEEQESTTERYHPENLEQLQSQTHFSRQELQLLYRGFKNDCPSGVVNE 80  
WD40-rpts      (_____________________________________________________________________WD 1______

Query       81 DTFKNIYALFFPLGDSSKYAQFLFNAFDKDKNGSLSFEELVCDLSVLLRGTTEEKLNWAFNLYDINKDGQITKEEMLDIM 160 
WD40-rpts      _______________________________________________________________)                

Query      161 KSIYDLMGKSIHPRLKEEAVRQHVRMFFQNMDINQDGVVTIDEFIDSCEKDEHIMQSLKIFDNAV 225 
WD40-rpts                                                                       

1 WD40-repeats found in QUERY=ENSDARP00000054201 (Len=225):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-144      2.99  237.97  0.03798       25.0%     -20.46

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-144    MSSRRRRCKRQLIKFTQHIARLITGTLNTDNEDEEQESTTERYHPENLEQLQSQTHFSRQELQLLYRGFKNDCPSGVVNEDTFKNIYALFFPLGDSSKYAQFLFNAFDKDKNGSLSFEELVCDLSVLLRGTTEEKLNWAFNLYD

   WD40 Template    TGEC----------------------LRTLS------GHTSGVT---------SVSFS---------------PDGKRL----------------VS-----------GSEDGTIK-------------VW------------D