Accession: ENSDARP00000049436 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000049436 (Len=1708)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000049436, Len=1708):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAKVRLKKLEQLLLDGHQKNDKSLSVETLLDILICLYNECSNSPLKREKHVTDFLEWVKPFTTTVKEMRLHRDDFEMLK 80  
WD40-rpts                                                                                      

Query       81 VIGRGAFGEVAVVKMKHTERVYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDDNYLYLVMDYYVGGD 160 
WD40-rpts                                                                                      

Query      161 LLTLLSKFEDRLPEDMAKFYVAEMVLAIHSIHQQRYVHRDIKPDNVLLDMNGHIRLADFGSCLKMMQDGTVQSSVAVGTP 240 
WD40-rpts                                                                                      

Query      241 DYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEDAKDLIQRL 320 
WD40-rpts                                                                                      

Query      321 ICSRERRLGQHGIEEFRKHAFFSGIDWENIRNMEAPYIPDVSSPSDTSNFDVDDDVLKNPDIAPPVSHTGFTGQHLPFVG 400 
WD40-rpts                                                                                      

Query      401 FTYTTESCFSDGGSMRGVALSDGGTGEDLQDGGMQVEAFEKRIRCLEQEKLELNRKLQESTQAVQSLHGSGRGAGTLGRD 480 
WD40-rpts                                                                                      

Query      481 KEIKKLNEEIDRLKKKLADSDRLEHQLEEAVTLRQDFESSSTKLKALDKQVKALKLEKEDIHKQLVESLDRLKSQTKELK 560 
WD40-rpts                                                                                      

Query      561 DAHQQRKLAMQEFSEVNERMAELRSQKQRLSRQLRDKEEEMEVVMQKIDAMRQDIRKTEKARKELESQLEDARAEASKER 640 
WD40-rpts                                                                                      

Query      641 KLREHSEVYSKQLESELETLKVKQGAGRASGLGAETQQELTKLKSELDKKGLYYEEELVRREASHTTEMKNLRKELQDSE 720 
WD40-rpts                                                                                      

Query      721 GQQLSLHKELLALKEKLEKAKRERQIEMEEAINALKEQYERERNLMSEDNRKLTAETDRLCSFVDKLTAQNRQLEDELQE 800 
WD40-rpts                                                                                      

Query      801 LASKKESVAHWEAQIAEIIQWVSDEKDARGYLQALASKMTEELESLRSSSLGSRTLDPLWKVRRSQKLDMSARLELQSAL 880 
WD40-rpts                                                                                      

Query      881 EAEIRAKQLVHDELRKVKAANISFESKLKDTEAKNRELEEQLENMKKEMEESRSRSDKGLKLPDFQDSIFDYFNTSPLAH 960 
WD40-rpts                                                                                      

Query      961 ELTFRTSSVGDVDVAPQKTDIPPSSPSAATEQDEAVKPQATTPATPSPMYQPTLTAPKPKAHQLSIKTFSSPTQCTHCTS 1040
WD40-rpts                                                                                      

Query     1041 LMVGQMRQGYACEVCSFICHVSCKDNAPQLCPIPPEQTKRPLGIDVQRGIGTAYKGFVRIPKPTGVKKGWQRAYAVVCDC 1120
WD40-rpts                                                                                      

Query     1121 KLFLYEVPEGKSTQPVVMASQVLDLRDEEFSVSSVLASDVIHANHKDVPCIFRVTSSALKSSIRPVPLLILAESEAEKRK 1200
WD40-rpts                                                                                     (

Query     1201 WVGILEGLQSILAKNRLKNRVVHVLHEAYDSSLPAIKTTLSAAIVDRERIVLGTEDGLFVVEITRDVIVRAADCKKVCQI 1280
WD40-rpts      _____________________________WD 1_____________________________)                 

Query     1281 ELIPKEKMVALLSGRNRHVHLYPWAALEGAEGGFDAKLTDTRGCQAMTIGNLRPGGPACLFAGVKRQVFCYEITRAKPHH 1360
WD40-rpts                                                                                      

Query     1361 RKLWEVQAPGVVQWLGIIRERICVGYPSGFALLAMQGESSPVSLVSPGDPSLAFLAQQPLDALHAMEVGSNELLLCFSQL 1440
WD40-rpts                                                                                      

Query     1441 GVYVDATGRRSRTQELMWPSTPLACSSNSNCLTVYSDYGVDVFDVHTMEWVQTISLRKIRPLNVEGSLNLLSIEQPHLIY 1520
WD40-rpts                                                                                      

Query     1521 FSNNSSDGCDLAIPETSDNSKKLMVRTRSKRKFLFKVPEEERLQQRREMLRDPEMRSKLISHPTNFNHVAHMGPGDGMQV 1600
WD40-rpts                                                                                      

Query     1601 LMDLPLSVMPSSQDDLSKDKPRPLSSISRQQRSKTHITRTASGGGDFGGAGSSRSISDQDQDYEREPDSDSTKHSTPSNS 1680
WD40-rpts                                                                                      

Query     1681 SNPSSPPSPNSPHRSQLTLDSLDQSLDG 1708
WD40-rpts

1 WD40-repeats found in QUERY=ENSDARP00000049436 (Len=1708):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13  1200-1263     2.94  235.91  0.04044       22.5%     19.69

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1200-1263   KWVGILEGLQSILAKNRLKNRVVHVLHEAYDSSLPAIKTTLSAAIVDRERIVLGTEDGLFVVEI

   WD40 Template    TGECL----------RTLSGHT--------SGVTSV------SFSPDGKRLVSGSEDGTIKVWD