Input parameters:

  Query = ENSDARP00000047200 (Len=1035)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000047200, Len=1035):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENAHTKTVEEVYSFFAVNESTGLGLEQVKRQREKWGPNGKSLWELVVEQFEDLLVRILLLAACISFVLAWFEEGEETIT 80  
WD40-rpts                                                                                      

Query       81 AFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDRKTVQRIKARDIVPGDIVEVAVGDKVPADIRLT 160 
WD40-rpts                                                                                      

Query      161 SIKSTTLRVDQSILTGESVSVIKHTDPVPDPRAVNQDKKNMLFSGTNIAAGKAVGVVVATGVNTEIGKIRDEMASTEQER 240 
WD40-rpts                                                                                      

Query      241 TPLQQKLDEFGQQLSKVISLICIAVWIINIGHFNDPVHGGSWVRGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 320 
WD40-rpts                                                                                      

Query      321 AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCRMFIVDQANGNTCSLKEFSISGSTYAPDGQVCHEGKPVQCSK 400 
WD40-rpts                                                                                      

Query      401 FDALVEMASICALCNDSSLDYNEAKGVYEKVGEATETALTCLVEKMNVFDTELKGLSKVERANACNSVIKQLMKKEFTLE 480 
WD40-rpts                                                                                      

Query      481 FSRDRKSMSVYCTPNKARSSMGKMFVKGAPEGVIDRCTHIRVGGNKVPMTPGIKEKIMSVIREYGTGRDTLRCLALATRD 560 
WD40-rpts                                                                                      

Query      561 NPLSKESLVLEDSTRFVEYETDLTFVGCVGMLDPPRAEVAASIKLCRQAGIRVIMITGDNKGTAVAICRRIGIFGENDDV 640 
WD40-rpts                                                      (_______________________________

Query      641 SRMAYTGREFDDLSAAAQREAVLTARCFARVEPSHKSKIVEFLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAK 720 
WD40-rpts      ________________WD 1______________________________________________)             

Query      721 TASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALG 800 
WD40-rpts                                                                                      

Query      801 FNPPDLDIMSKPPRNAREPLISGWLFFRYLAIGCYVGAATVGAAAWWFIAAEDGPRVTFYQLSHFLQCAPDNPEFEGLQC 880 
WD40-rpts                                                                                      

Query      881 EIFGSPYPMTMALSVLVTIEMCNALNSVSENQSLLHMPPWENVWLLGAICLSMSLHFLILYVEPLPMIFQITPLNVTQWL 960 
WD40-rpts                                                                                      

Query      961 MVLKISLPVILLDEVLKFAARNYLDKPKDLDNPKGKACSLSACTEGISWPFVALSLPLVLWIYSTDTNVAELFWS 1035
WD40-rpts                                                                                 

1 WD40-repeats found in QUERY=ENSDARP00000047200 (Len=1035):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   609-707      2.92  235.11  0.04143       17.5%     21.91

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  609-707    AGIRVIMITGDNKGTAVAICRRIGIFGENDDVSRMAYTGREFDDLSAAAQREAVLTARCFARVEPSHKSKIVEFLQSYDEITAMTGDGVNDAPALKKAE

   WD40 Template    TGECLRTLSGHT----------------------SGVTS-----VS----------------FSPD-----------GKRLVSGSEDGTIK-----VWD