Input parameters:

  Query = ENSDARP00000046888 (Len=1296)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000046888, Len=1296):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRRRSSRLRCPKQQIKNGKQNSNNAFTCNPATMCFIKRYASSTSDCGSVSKNPALDQKYWEDITAICRQTPYCLYLYHG 80  
WD40-rpts                                                                                      

Query       81 VEIENDKKASVLLLGFFDEDTGKNKIRLLDVVYPTKESTEDICNYILDLLRKIGIPISNMAILYSDFPDHEHLVAGLQLM 160 
WD40-rpts                                                                                      

Query      161 KAEIVSLCGLTDLTGQVCHSGVEKIEFSDLILNLIIEIYKHFPSFPADLQALLEDVEGSDIDNLTSQCSLFWRIIKKISL 240 
WD40-rpts                                                                                      

Query      241 AWSHLEKYFGSLDTEEEAVCLLLEDPKIKLNVLFLTHALQPLCDFQEIIDQGASVLQLLQDASKLLRLYTQSFLRPKAAE 320 
WD40-rpts                                                                                      

Query      321 YFHRRGKTSLVQETVGHLPRGEVAVGEQAADFLQQHSEELSDYLETFHRSIISFYTTVTVNIVKRLPLPDSTLRNLSLVL 400 
WD40-rpts                                                                                      

Query      401 SPGKKLEVTGKMVQDLGIGFGVCSENVSLLKDEFLEYQFIDESDAQPADQSMKQYWKTELRIMGKASSFGKVILSLLALP 480 
WD40-rpts              (________________________________________WD 1___________________________

Query      481 TTLKKEQNFERLFQHTDNIKRKKLKDCKKHVSEDDVTDSSSYKSAPSHLSPEMLDVIDLGEEEDVEPMEVEDTLPVSDLD 560 
WD40-rpts      _____________)                                                                  

Query      561 TESQNDTKGNCPNVSSNDDDDDDDKCSSSHDDYSSSDDDGDVIWREKGKRNSCHNNEQTKNPYKGSYIVGEMVWGPLEGF 640 
WD40-rpts                                                                                      

Query      641 GLWPGLVQSWDSRKPCGSMRKVFFFGNSMQSEIQADDLTPFFSFAKCFSSNSFATVATYKDAIFNSLQVASRRSRMFFSP 720 
WD40-rpts                                                                                      

Query      721 DTDSMDELLRVMLNWAFGGFKPSGEDGLRPQSECNELVFTPRSVNGNDGPSSNFKDHREKLFNLTVSLNKLPESLDLHRG 800 
WD40-rpts                                                                                      

Query      801 SIDIGKTHVYRKFMLPKRSLRPLQSREKKYTHWKRYLNDMESMKVDSRQNSQERYEMVHAFLENKMDIEEFCLSCGSTFV 880 
WD40-rpts                                                                                      

Query      881 DIIHPLFEGSLCVKCKFNFTETLYRYDEDGYQSYCTVCCSGMEVILCGHDSCCRCYCVDCLDILVGKGTFKQLKNVDPWT 960 
WD40-rpts                                                                                      

Query      961 CYLCAPETSSGALKPRHDWSIRVQELFANNSAMQFEPHRVYPSIPADQRRPVRVLSLFDGIATGYLVLRDLGFKVEKYVA 1040
WD40-rpts                                                                                      

Query     1041 SEVDEESVTISMVNHEGKITYVDDVKKITRKHIDKWGPFDLLIGGSPCNDLCTVNPGRKGLFEGSGRLFFEYYRLLNVLK 1120
WD40-rpts                                                                                      

Query     1121 PKEDDPRPFFWLFENVVLMENRVRADISRFLECNPVLIDAVKVSPAHRARYFWGNIPGMNRPIIASQKDKVSLQDCLDGG 1200
WD40-rpts                                                                                      

Query     1201 RTAKYEKIRTITTRPNILRPGIDDRHYPIVMNGKDDSLWITEIEKIFGFPKHYTDVKNLGRMQRQRVLGKSWSVPVIRHL 1280
WD40-rpts                                                                                      

Query     1281 LAPLKDYFACDEFPAK 1296
WD40-rpts                      

1 WD40-repeats found in QUERY=ENSDARP00000046888 (Len=1296):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   409-494      2.84  231.85  0.04574       25.0%     -10.66

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  409-494    TGKMVQDL-GIGFGVCSENVSLLKDEFLEYQFIDESDAQPADQSMKQYWKTELRIMGKASSFGKVILSLLALPTTLKKEQNFERLFQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD---------GKRLVSGSED--------------GTIKV----------WD--------------