Input parameters:

  Query = ENSDARP00000044596 (Len=553)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000044596, Len=553):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFQAKKSNPRVTSDKLIIKGGKIVNDDQSFYADIYVEDGIIKQIGENLIVPTGVKTVDAYGHIVIPGGIDVNTCLQAPH 80  
WD40-rpts                                                                                      

Query       81 LGMSPADDFYHGTRAALAGGTTMIIDHVVPEPGSSLLSAFDQWKDTADKRSCCDYSLHIDITRWHDGLFEELESLVKDKG 160 
WD40-rpts                                                                                      

Query      161 VNSFLIFMAYKDKFQSSDTQIYEMFSAMRELGAIAQVHAENGDIIEEEQKKLLDLGITGPEGHVLSHPEEVKGQPCKLGY 240 
WD40-rpts                                                                                      

Query      241 LGNVFCAVIDMVIYGEPIAASLGTDGSHYWSKNWAEAAAFVMSPPLNPDTSTPDYLNSLLSCGDLQVTASANCTFTTAQK 320 
WD40-rpts                                                                   (__________________

Query      321 AVGKDDFTFIPEGTNGIEERMSIVWDKAVATGKMDENDFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWNTKETRTFS 400 
WD40-rpts      _________________________WD 1__________________________________________)        

Query      401 AKTHNLTVEVNIFEGMECRGFPVLVISQGRIVLEDGTLSVMEGSGRFIPRKAYPDYVYKRIKARSRMADARGVPRGNYDG 480 
WD40-rpts                                                                                      

Query      481 PVHDVISMTKSVPATPTTRGPSCPGKTPLGPTRNLHQSGFTLSGTQMDDHIPRRTAQKIVAPPGGRSNITSLS 553 
WD40-rpts                                                                               

1 WD40-repeats found in QUERY=ENSDARP00000044596 (Len=553):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   302-392      4.47  299.28  0.00575       22.5%     13.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  302-392    CGDLQVTASANCTFTTAQKAVGKDDFTFIPEGTNGIEERMSIVWDKAVATGKMDENDFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWN

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKR------------------LV-------------------------SGSEDGTIKVWD