WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000041156 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000041156 (Len=2883) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000041156, Len=2883): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASVLPVATPGDRAPPPGYRQHGAAVTAATSSGTSDIMMMSCSGSVVLPAGMINPSVPIRNIKTKFAVLIGLIQVGEVSN 80
WD40-rpts
Query 81 RDIVETVLNLLVGGEFDLEMNFIIQDAEAIICMLELLEHCEVTCQAEIWSMFTAILRKSVRNLQTSSEVGLIQRLLIKMS 160
WD40-rpts
Query 161 SVDDMIADLLVDMLGVLASYSITVKELKLLFSMLRGEGGLWPRHAVKLLSVLSQMAQRHGPDTFFNFPGRSAAAIALPPI 240
WD40-rpts
Query 241 AKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGIGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMV 320
WD40-rpts
Query 321 SIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAIYVFSEALNPAQIFAIHQL 400
WD40-rpts
Query 401 GPGYKSTFKFKSESDIHLADHHKQVLYDGKLANSISFTYNAKATDAQLCLESSPRENPSIFVHSPHALMLQDVKAIVTHS 480
WD40-rpts
Query 481 IHSAIHSIGGIQVLFPLFAQLDFHQHNESQVETTVCSTLLAFLMELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHVTR 560
WD40-rpts
Query 561 AVLDQFLSFAKYLDGLTHGAPLLKQLCDHILFNAAIWIHIPAKVQLSLYTYLSSEFIGTTTIYSTIRRVGTVLQIMHILK 640
WD40-rpts
Query 641 YYYWAVNPNNTSGITPKGLDGPRPSQKEISSLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENLHDVLQLLVA 720
WD40-rpts
Query 721 LMSEHPASMIPAFDQRNGIRVVYKLLASKSESIRVQALKVLAYFLKHLGHKRKVEIMHTNSLFTLLGERLMLHSNTVSIT 800
WD40-rpts
Query 801 TYNTLYEILTEQVCTQVVHKPHVEPDSTVKIQNPMILKVVATLLKNSTPSADLMEVRRLFLSDMIKLFSNSRENRRCLLQ 880
WD40-rpts
Query 881 CSVWQDWMFSLGYINPKNSEEQKITEMVYNIFRILLYHAIKHEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQRQ 960
WD40-rpts
Query 961 EEENIKKGKKGLVSTISGLSAQASSIKGTLELDADSQTQTPESEADEPETTDSGRNILSETKSLDEDNPASGVHVEVHDL 1040
WD40-rpts
Query 1041 LVDIKAEKVEATEVKMDDLDLLPVTENGGLVEVDSLLDNVYSAAVEKLNSSVNNVLVPKASLENKNSGPLITLADEKDAI 1120
WD40-rpts
Query 1121 SSNNTFLFGTLASGSGENLLPEIGPSEPLPLSGVEPQVHTSSSADLGLLALMSKSSKELSANTVALEDDSFKMQPALSGF 1200
WD40-rpts
Query 1201 SISEGESLTKCPGQVETVAVDLEQGASGVKDVSTSDTEKSDDGKEKEIKKIQTTATTQSLHGRSGSHLDRDLRVDLGFRA 1280
WD40-rpts
Query 1281 MPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALESDVHIWRSHSTKSIMDFVNSNENIIFVHNTIHLISQM 1360
WD40-rpts
Query 1361 VDNIIIACGGILPLLSAATSPSSEMEGLEVTQGMSSETAVIFLTRLMAIVDVLVFASSLNFSEIEAEKNMSSGGLMRQCL 1440
WD40-rpts
Query 1441 RLVCCVAVRNCLECRQRQRDRSLKSSLSCSKSQEGLQSVSTASKTTIENFPSNVSPIKDPDRLLQDVDINRLRAAVFRDV 1520
WD40-rpts
Query 1521 DDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETGRFINQSGRGIRQEINSPTSTDHPSLLTDSRKEALGVLESRQESS 1600
WD40-rpts
Query 1601 LPHSDSGLGDDQVSSVMNGADLDLAMGGPNGMSGLFCTLSSVARSQESLIEPSSVEHLKTASSISSINQANKGINVKEIL 1680
WD40-rpts
Query 1681 KSLVAAPVETTESGTEALPYPEQQAMKREAQAMMPMQFHSFDRSVVVQAKKPPSGLTVNTVGTSGSSSALTSGSTPNIFA 1760
WD40-rpts
Query 1761 AASITPKSMINTTGATDTSSSSSASFVNGATSKNLPAVQTVAPMPEDTMENMSITTKLERALEKVAPLLREIFVDFAPFL 1840
WD40-rpts
Query 1841 SRTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILN 1920
WD40-rpts
Query 1921 RQRAEDVHKHAEFESSCAQYAADRKEEETMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAAAQRSSCLFPFSSQ 2000
WD40-rpts
Query 2001 QQQHDFWRLDYWEDDLRRRRRFIRNPFGSTHLDITCKSLEDYGPEEDEALRGRKGFRGQASVSQNTETELMLEGDDDAVS 2080
WD40-rpts
Query 2081 LLQEKEVDNLAGPVVLSTPAQLIAPVTVARGTLSITTTEIYFEVDEDDPAFRRIDAKVLVYSEGLHGKWMFSEIRAVFTR 2160
WD40-rpts
Query 2161 RFLLQNTALEIFMANRTSVMFNFPDQPTVKKVVYSLPCVGVGTSYGLPQARRISLASPRQLFKSSNMTQRWQRREISNFE 2240
WD40-rpts
Query 2241 YLMFLNTIAGRTYNDLNQYPVFPWVLTNFESEELDLTVPSNFRDLSKPIGALNPKRAVFYADRYESWDEETPPCHYTTHY 2320
WD40-rpts
Query 2321 STANSTLHWLVRIEPFTTFFLNANGNKFDHPNRTFSSIARSWRHCQRDTADVKELIPEFYYLPEMFVNSNGYCLGDRDDG 2400
WD40-rpts
Query 2401 VPVCDVELPAWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAARALNVFHHLTYEGSVNLDSLASDPPLR 2480
WD40-rpts
Query 2481 EATEAQIQSVGQSPSQLLIEPHPPRSSAMHLSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTLPAVVTVTCSRL 2560
WD40-rpts
Query 2561 FAVNRWHNTVGLRGAPGYSLEQAHHLPIEMDSLIANNSGTNKRQITDLVDQSIQINTQCFVVTADNRYILVCGFWDKSFR 2640
WD40-rpts
Query 2641 VYSSDTGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNNSDYPAPRAVLTGHDFEV 2720
WD40-rpts (___________________WD 1__________________) (_____________________W
Query 2721 VCVSVCAELGIIISGAKEGPCLVHTITGDLLRALEGPDSCVLPRLICVSSEGHCIIYFDRGQFCSFSINGKLLAQMEIND 2800
WD40-rpts D 2_____________________) (___________
Query 2801 STRAIVLSSDGQNLVTGGDNGVVEVWQACDFKQLYVYPGCDAGVRAMDLSHDQRTLVTGMASGSIVAFNIDFNRWHFEHQ 2880
WD40-rpts ______WD 3________________) (_________________WD 4________________)
Query 2881 NRY 2883
WD40-rpts
 4 WD40-repeats found in QUERY=ENSDARP00000041156 (Len=2883): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 43 2647-2689 5.25 331.59 0.00211 32.5% 53.54 WD 2: Seg 48 2698-2745 4.25 290.21 0.00762 25.0% 51.29 WD 3: Seg 56 2789-2827 5.26 332.10 0.00208 30.0% 56.70 WD 4: Seg 60 2831-2869 4.29 291.87 0.00724 27.5% 55.20Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2647-2689 -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY WD 2 2698-2745 GDNPNNSDYPAPRAVLTGHDFEVVCVSVCAE----LGIIISGAKEGPCLVHT WD 3 2789-2827 NGK--------LLAQMEINDS-TRAIVLSSD----GQNLVTGGDNGVVEVWQ WD 4 2831-2869 -FK--------QLYVYPGCDAGVRAMDLSHD----QRTLVTGMASGSIVAFN WD40 Template TGE--------CLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |