Input parameters:

  Query = ENSDARP00000033992 (Len=647)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000033992, Len=647):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLFHHVVDRGAKKRGRNGEQRLFPLSSLLDGYECARRDEHISYGASAAAVPPFGCTFSSAHGQQNCLAVANEEGFVTIF 80  
WD40-rpts                                            (___________________WD 1__________________

Query       81 NTGEKQSSVLKEWQAHDNAVFDIAWVPGTNCLVTASGDQTARLWDVITGDLLGTFKGHQCSLKSVAFYKQEKAVFSTGGR 160 
WD40-rpts      )     (_________________WD 2________________)   (_________________WD 3__________

Query      161 DGNIMIWDTRCSKKDGFYRQVKQISGAHMKPERFTPQTKKRRGMAPPVDSQQGVTVVLFCDETKLISSGAVDGIIKMWDL 240 
WD40-rpts      _______)                                   (_______________WD 4_______________) 

Query      241 RRNYTAYHQNPLPLQAYPYPGSCTRKLGYSGLSLDYTGSRLFSNCTDDNIYMFNISGLKTTPVAVFSGHSNSSFYVKSTV 320 
WD40-rpts                     (_________________WD 5________________)     (__________________WD

Query      321 SPDDQFLASGSSDHNVYIWKISDPKQAPMMLQGHSQEVTSVAWCPTDFTKIASCSDDNTVRIWRLNRKPEGENSTIQDGN 400 
WD40-rpts       6_________________)    (_________________WD 7_________________)   (____________

Query      401 LVGWTIRKVQSPNRTPGHHSPVELTPSKNPGSVRSVSLASPQPATCAPTGAALPLPSNTSSAPPAKLTSPKMPSSLQQWI 480 
WD40-rpts      _____WD 8________________)(_________________WD 9_________________)        (_____

Query      481 SRSSKSPVRKALTPVLQGLSFEHRVKRRLETGDSASSGLGEEIDGVSELYPNVKRSRSSVSTLKKEDSFGLESEKRLGSD 560 
WD40-rpts      __________WD10______________)                                                   

Query      561 GAEASGKENSSPRRTDWLSVISQKFKGSAQPKSPSSGSSQQDTRTLESPAAVSPRPMKVFSPPTNKKASPSKPMKKISSY 640 
WD40-rpts                                                                                      

Query      641 FMKRTQD 647 
WD40-rpts             

10 WD40-repeats found in QUERY=ENSDARP00000033992 (Len=647):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    39-81       4.85  315.14  0.00352       15.0%     45.61
  WD 2:  Seg  7    87-125      8.34  459.17  4.0e-05       27.5%     45.17
  WD 3:  Seg 11   129-168      8.63  471.12  2.8e-05       37.5%     55.85
  WD 4:  Seg 18   204-239      8.06  447.49  5.8e-05       35.0%     46.72
  WD 5:  Seg 23   256-294      6.85  397.78  0.00027       20.0%     38.16
  WD 6:  Seg 26   300-340      7.66  431.15  9.6e-05       32.5%     52.18
  WD 7:  Seg 30   345-384      8.30  457.34  4.3e-05       35.0%     45.86
  WD 8:  Seg 33   388-426      6.16  369.30  0.00066        0.0%     25.88
  WD 9:  Seg 35   427-466      6.73  392.67  0.00032       12.5%     25.26
  WD10:  Seg 38   475-509      3.00  238.43  0.03745       17.5%     28.55

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-81     DEHISYGASAAAVPPFGCTFS--SAHG-QQNC-LA----VANEEGFVTIFN
   WD 2   87-125    -SSV---LKEWQAHDNAVFDI--AWVP-GTNC-LV----TASGDQTARLWD
   WD 3  129-168    -GDL---LGTFKGHQCSLKSV--AFYK-QEKAVFS----TGGRDGNIMIWD
   WD 4  204-239    MAP-------PVDSQQGVTVV--LFCD-ETKL-IS----SGAVDGIIKMWD
   WD 5  256-294    -AYP---YPGSCTRKLGYSGL--SLDY-TGSR-LF----SNCTDDNIYMFN
   WD 6  300-340    -TTP---VAVFSGHSNSSFYVKSTVSP-DDQF-LA----SGSSDHNVYIWK
   WD 7  345-384    -KQA---PMMLQGHSQEVTSV--AWCPTDFTK-IA----SCSDDNTVRIWR
   WD 8  388-426    -KPE---GENSTIQDGNLVGW--TIRK-VQSP-NR----TPGHHSPVELTP
   WD 9  427-466    SKNP---GSVRSVSLASPQPA--TCAP-TGAA-LP----LPSNTSSAPPAK
   WD10  475-509    S------------LQQWISRS--SKSP-VRKA-LTPVLQGLSFEHRVKRRL

   WD40 Template    TGEC---LRTLSGHTSGVTSV--SFSP-DGKR-LV----SGSEDGTIKVWD