Input parameters:

  Query = ENSDARP00000028918 (Len=1345)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000028918, Len=1345):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRVFTLSEKSWSGSCLQYKWQKTVGNYLAVAGPDNLVKIFDRHGQKVNELNLPGNCVSLDWDKDGDILAVIAEKSSSVY 80  
WD40-rpts        (_________________WD 1_________________)(__________________WD 2_______________

Query       81 LWDANVNKTSQLDSGMRDQMSFLLWSKTGPLLAVGTSKGNLLIYNQQTSRKIPVLGKHTKKITCGCWSSQNLLALGSEDR 160 
WD40-rpts      __)   (_________________WD 3________________)   (________________WD 4___________

Query      161 SITISNHEGDTIRQTSVRADPADVQFSVMKTDERSSPGQSTVSVALGKKTLFLFNLNDPDNPIELAFQQRYGNIISYRWY 240 
WD40-rpts      _____)          (_________________WD 5________________)(___________________WD 6_

Query      241 GDGYIMIGFSHGYFVVISTHIREIGQELFQAHNHKDSLTSIAISQSLNKAASCGDNCIKIHDLTDLKEMYAIVTLDEETK 320 
WD40-rpts      __________________)     (________________WD 7________________)(_________________

Query      321 GLDQMCWTDDGQLLAVSSQQGTLHVFLTKLPILGDSSGTRIAYLTSLLEVTVANPVEGESPVPVAVEVEPSFIAVGPYHV 400 
WD40-rpts      ___WD 8___________________)                   (_________________WD 9____________

Query      401 AVGMNNRAWFYALGDSGVERVKDTEYLGTVASMCLNCDYAAALFEGKLQLHVIDGDEQVVQEDRQTKLFPEPDQKYRILS 480 
WD40-rpts      _____)                                                       (_________________W

Query      481 HALTSDFLYYGTDTGLIQCFYFEDWQSVTEYRHTVGVRKVFPDPNGTRLVFIDEKSDGFLYCPVNDSVFEIPDFSPAIKG 560 
WD40-rpts      D10_________________)(__________________WD11_________________)                  

Query      561 VLWENWISSKGVFVAYEEDKVYTYAFHKDTIQGSKVILVGGTKLPFSHKPLLLHNGELTCQTQSGKINSVVLNTHAFLNN 640 
WD40-rpts                                                                                      

Query      641 QHSESSKDKLQSFLQQAVMLKRFSDAWSICKALNSSEAWGELGRACLHHMEVELAIRVYRMMGNVGMVMSLEDIKGIEDQ 720 
WD40-rpts                                                                                      

Query      721 NLLAGHLAMFCNDYNRAQDLYLTSSYPMAALEMRRDLQHWDSALQLAKRLDPDEIPFISKEYAIQLEFVGDYVNALAHYE 800 
WD40-rpts                                                                                      

Query      801 KGTTGNNKFQDHDESCLAGVARMSIRMGDIRRGANQAIKHPSKALKKDCGAILESMKQYSEAAQLYEKGQYYDKAASVYI 880 
WD40-rpts                                                                                      

Query      881 RCKNWAKVGELLPHVTSPKIHLQYAKAKEADGKYKEAAMAYESARDWDNVIRILLEHLNNPEEAVRIVRETHSIEGAKMV 960 
WD40-rpts                                                                                      

Query      961 ARFFLRLSDYGSAIQFLVLSRCSDEAFQLAQQHGQMEVYADIIGSEATIEDYQSIALYFEGEKNHLQAGKFFQKCGQYSR 1040
WD40-rpts                                                                                      

Query     1041 ALKHFLKCPSSDDSVAIEMAIEAVGEAKDESLTNQLIDHLMGESDGMPKDAKYLFRLYMALKQYREAARTAIIIAREEQS 1120
WD40-rpts                                                                                      

Query     1121 AGNYRNAHDVLFSMYAELQTQHIKIPAEMATNLMILHSYILVKIHVKRGDHLKGARMLIRVSNNISKFPSHIVPILTSAV 1200
WD40-rpts                                                                                      

Query     1201 IECHRAGLRNSAFSFASMLMRPEYRNKIDLKYKKKIEAMVRRPDTSEVEEESSPCPYCGFSLPDCELLCPGCKNNLPYCI 1280
WD40-rpts                                                                                      

Query     1281 ATGRHMVKEDWCVCPHCDFPALHSQFTQLLETESVCPMCSEALNVSEVKKVLECSKYLQQDQLEH 1345
WD40-rpts                                                                       

11 WD40-repeats found in QUERY=ENSDARP00000028918 (Len=1345):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       6.09  366.13  0.00072       20.0%     46.68
  WD 2:  Seg  5    43-83       4.46  299.09  0.00579       15.0%     53.81
  WD 3:  Seg  9    87-125      6.42  379.66  0.00048       17.5%     50.48
  WD 4:  Seg 13   129-166      5.68  349.17  0.00123       27.5%     54.76
  WD 5:  Seg 18   177-215      3.66  265.73  0.01622       10.0%     33.24
  WD 6:  Seg 22   216-259      4.11  284.34  0.00913       10.0%     51.25
  WD 7:  Seg 26   265-302      5.33  334.80  0.00191       27.5%     54.57
  WD 8:  Seg 30   303-347      6.41  379.38  0.00048       27.5%     54.37
  WD 9:  Seg 35   367-406      3.95  277.62  0.01124        7.5%     32.49
  WD10:  Seg 45   462-501      5.57  344.83  0.00140       12.5%     54.93
  WD11:  Seg 49   502-542      4.57  303.63  0.00503       27.5%     50.54

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     RVF-----TLSEKS-WSGSCLQYKWQKTVGNYLAV-AGPDNLVKIFD
   WD 2   43-83     RHG-----QKVNEL-NLPGNCVSLDWDKDGDILAVIAEKSSSVYLWD
   WD 3   87-125    -NK-----TSQLDS-GMRDQMSFLLWSKTGPLLAV-GTSKGNLLIYN
   WD 4  129-166    -SR-----KIPVLG-KHTKKITCGCWSSQN-LLAL-GSEDRSITISN
   WD 5  177-215    VRA-----DPADVQ--FSVMKTDERSSPGQSTVSV-ALGKKTLFLFN
   WD 6  216-259    LND-PDNPIELAFQ-QRYGNIISYRWYGDGYIMIG-FSHGYFVVIST
   WD 7  265-302    -GQ-----ELFQAH-NHKDSLTSIAISQSLNKAAS-CG-DNCIKIHD
   WD 8  303-347    LTDLKEMYAIVTLD-EETKGLDQMCWTDDGQLLAV-SSQQGTLHVFL
   WD 9  367-406    LLE-----VTVANP-VEGESPVPVAVEVEPSFIAV-GPYHVAVGMNN
   WD10  462-501    EDR-----QTKLFP-EPDQKYRILSHALTSDFLYY-GTDTGLIQCFY
   WD11  502-542    FED-----WQSVTEYRHTVGVRKVFPDPNGTRLVF-IDEKSDGFLYC

   WD40 Template    TGE-----CLRTLS-GHTSGVTSVSFSPDGKRLVS-GSEDGTIKVWD