Input parameters:

  Query = ENSDARP00000027560 (Len=541)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000027560, Len=541):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSQSSSGMSGRGSGNNPDQSEPEANQNANQTGRTQAERQSGSEEDVDLAQVLAYLLRRGQVRLVHGSGATGLQLVQSYS 80  
WD40-rpts                                                                           (__________

Query       81 DSDEDSDGAWDGRLGHRYDPPVDAQPDTQEVDRSEIHTQILLATASSGLKGRHSFTHMLAEREQGRCRGSSFSHGECSRI 160 
WD40-rpts      _______________WD 1________________________)(________________WD 2_______________

Query      161 RSHFLPNHVVYKDTYQQKVFCGVYSDEGNMFLSACQDQNIRLYDTSRGRFTLKKTVKARDVGWSILDVCFTPDARCVLYS 240 
WD40-rpts      _)   (_________________WD 3________________)(____________________WD 4___________

Query      241 SWSDYIHVCSVDGDNETHTALDLNPDERRFCVFSLAASTDGKEILGGANDGCLYVFDREQNKRTLKIDAHEDDVNAVAFA 320 
WD40-rpts      _________)          (________________WD 5_______________)   (_________________WD

Query      321 DSSSQLLFSGSDDALCKVWDRRTLREDRPQPVGHLAGHRDGITFIHSKGDARYLISNSKDQTIKLWDVRKFSPKEGLAAS 400 
WD40-rpts       6_________________)        (_________________WD 7________________)   (_________

Query      401 RLAVTQQNWDYRWQQVPQRALKRHKLTGDTSVMTYRGHGVLHTLIRCRFSPEFSTGQKFIYTGCSTGKIVIYDVLTGSVV 480 
WD40-rpts      ______WD 8______________)   (____________________WD 9___________________)   (___

Query      481 CKLSNHDACVRDVSWHPYNNNMVSSSWDGAIRLWEHTQNHLLDKDRERMNVDVVDMKRKGY 541 
WD40-rpts      ______________WD10________________)                          

10 WD40-repeats found in QUERY=ENSDARP00000027560 (Len=541):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    70-124      5.41  338.19  0.00172       12.5%     40.72
  WD 2:  Seg  7   125-162      5.68  349.48  0.00121       15.0%     37.40
  WD 3:  Seg 10   166-204      8.32  458.26  4.1e-05       17.5%     53.38
  WD 4:  Seg 14   205-250      6.66  389.63  0.00035       25.0%     57.60
  WD 5:  Seg 19   261-297      8.03  446.55  6.0e-05       27.5%     39.51
  WD 6:  Seg 22   301-340      8.35  459.56  4.0e-05       32.5%     57.60
  WD 7:  Seg 26   349-387      9.38  502.19  1.1e-05       37.5%     53.08
  WD 8:  Seg 29   391-425      3.82  272.49  0.01317       10.0%     26.42
  WD 9:  Seg 32   429-473      6.91  400.04  0.00025       27.5%     49.25
  WD10:  Seg 36   477-515      9.79  519.03  6.3e-06       37.5%     55.66

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   70-124    -AT----GLQLVQSYS------DSDEDSDGAWDGRLGHRYDPPVDAQPDT-QEVDRS-EIHTQILLAT
   WD 2  125-162    -------ASSGLKGRH------SF----------------THMLAEREQG-RCRGSSFSHGECSRIRS
   WD 3  166-204    -PN----HVVYKDTYQ------QK----------------VFCGVYSDEG-NMFLSA-CQDQNIRLYD
   WD 4  205-250    TSRGRFTLKKTVKARD------VG--------------WSILDVCFTPDA-RCVLYS-SWSDYIHVCS
   WD 5  261-297    -------LDLNPDERR------FC----------------VFSLAASTDG-KEILGG-ANDGCLYVFD
   WD 6  301-340    -NK----RTLKIDAHE------DD----------------VNAVAFADSSSQLLFSG-SDDALCKVWD
   WD 7  349-387    -PQ----PVGHLAGHR------DG----------------ITFIHSKGDA-RYLISN-SKDQTIKLWD
   WD 8  391-425    -FS----PKEGLAASR------LA----------------VTQQNWDYRW-QQVPQR-----ALKRHK
   WD 9  429-473    -DT----SVMTYRGHGVLHTLIRC----------------RFSPEFSTGQ-KFIYTG-CSTGKIVIYD
   WD10  477-515    -GS----VVCKLSNHD------AC----------------VRDVSWHPYN-NNMVSS-SWDGAIRLWE

   WD40 Template    TGE----CLRTLSGHT------SG----------------VTSVSFSPDG-KRLVSG-SEDGTIKVWD