Input parameters:

  Query = ENSDARP00000027152 (Len=1043)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000027152, Len=1043):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 HSLKYDSSRITFCHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPKDEGKLLIGF 80  
WD40-rpts      (_______________WD 1______________)                 (________________WD 2_______

Query       81 ESGTIVMWDLRAKRADFRIYYDEAIHSVSWHHEGRQFMCSHSDGSLSMWNMRNTAKPFQVTFPHGKTQRDGRKESCKPIL 160 
WD40-rpts      ________)  (_________________WD 3________________)                              

Query      161 KVEYKTSRNSSEAFVIFSGGLSYDKAGRRPTLTIMHGKAITVLEMDYPIVDFMVLCETPYLNEVQEPYAVVVLLEKDFVV 240 
WD40-rpts                                                                                      

Query      241 VDLTQSNFPIFENPYPMDVHESPVTCTAYFADCPPDIIPVLYSIGAKHKKTGYSHKEWPVSGGTWTVGSQTYPEIIITGH 320 
WD40-rpts                                                  (____________________WD 4___________

Query      321 ADGSIKFWDATAITLQMLYKLKTSKVFEKPKTGDMGRSADLVEEDPYAVQMISWCPQSRIFCVVGISAHVILYRFSKHDA 400 
WD40-rpts      ________)                                                                       

Query      401 NTIITSLELRLQCEMEDVISPSDTENTPCFSDPSGHSPQPQPPSPRSNTPDSVRDSIPCLKVKDRMIRMPPGYQAELVVQ 480 
WD40-rpts                                                                                      

Query      481 LLWVDGEPPQQITCLDLNSAYGLLALGNCNGLAVVDYLQKTILLCMSTLELYGSADPFQRLTRSPRKNRQSTSEYFCMRG 560 
WD40-rpts                                                                                      

Query      561 LSNFYSDSKKRIRTSYQSLTELSDNQVSLDLERSKSPTSDHVNGHCTSPTSQPCPSGRARVPGGPEGPRLARRGPGRPPF 640 
WD40-rpts                                                                                      

Query      641 RKAQSAACMEVSLPVSSLTEAESRENSFSRSRSSSVSSIDRETKEAVTTLQFAESYGRKSDSLPTPCLWVGTSLGLVLII 720 
WD40-rpts                                                                                      

Query      721 PMSIPTDEQERQEDPVTVAPTGTVLMLKGSVLRFGFLDCGGALINSPYEVWRDQHAPDDPDRPRKRKLVNFSPSSSQEAC 800 
WD40-rpts                                                                                      

Query      801 GDGHLAVVCSERQAKVFYMPSQACLYVHNITESSFVLRADVVSVSNSVCLACFCANGHIMILSLPSLRPLLDVSYLPLTD 880 
WD40-rpts                                                                                      

Query      881 MRIARTFCFTNGGQALYLCSPTEIQRITYSISMCTDCVWETLGELFTPIETPEAQNRGFLKGFFGGNAQTFDREELFGEA 960 
WD40-rpts                                                                                      

Query      961 SAGKASRSLAQHIPGQGGIEGMKAAAGGVVGDLARARIALDERGQRLGELEERTALMMTSAETFSKHAHELMLKCKDKKW 1040
WD40-rpts                                                                                      

Query     1041 YQF 1043
WD40-rpts         

4 WD40-repeats found in QUERY=ENSDARP00000027152 (Len=1043):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       4.56  302.93  0.00514       20.0%     41.01
  WD 2:  Seg  5    53-89       4.72  309.43  0.00420       35.0%     44.33
  WD 3:  Seg  8    92-130      5.95  360.44  0.00086       17.5%     51.35
  WD 4:  Seg 21   285-329      5.43  338.85  0.00169       27.5%     21.91

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     -----HSLKYD-----SSRITFCHLPF-QSKWLYVGTERGNTHIVN
   WD 2   53-89     ----ELSTKTH-----PGPVVHLSDSPKDEGKLLIGFESGTIVMWD
   WD 3   92-130    -AKRADFRIYY-----DEAIHSVSWHH-EGRQFMCSHSDGSLSMWN
   WD 4  285-329    GAKHKKTGYSHKEWPVSGGTWTVGSQT-YPEIIITGHADGSIKFWD

   WD40 Template    TGECLRTLSGH-----TSGVTSVSFSP-DGKRLVSGSEDGTIKVWD