WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000025827 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000025827 (Len=2723) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000025827, Len=2723): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MASTERLYEVWMLYCSKKDPDYLKLWLEIFIGSYERCLDVDFEKPPSRSEETPPVMTLLPDNILQVLRLQLLQCVQKASE 80
WD40-rpts
Query 81 GLEPEQQTLALLLLKFLIVICRNLSNVEEIGACSYINHIINMTTLYIQQLKSKTKEKELADQTQAEEFVRHALAFCESLY 160
WD40-rpts
Query 161 DPYHNWRHRIHGQQLSTAERSRQKFKAAALTVEFVPFFYQCFQESEHLKDSLKCCLLHLFGAIVAGGQRNALLAISPATM 240
WD40-rpts
Query 241 EVLMGVLGAGECLSGGGDGEDWDSEAPDRKALLTLGCLREVVHRLLASSSDQRQVEISSVLESYFKLLNSDPAAAAQVKG 320
WD40-rpts
Query 321 RPAPPRSRHWESRFVALQVNMLETIQDMFECSDRPVLQAIFLNSNCFEHLTRLLQNSKLVNARCTTADKDQKDLTNRLLT 400
WD40-rpts
Query 401 GESEIQVFQGRLDSLAVATIKTLTTVMLKSPAAKEVFKERIGYTHLYEVLVSLGQPSRHLLKELMNMAVEGEHSSVGLLG 480
WD40-rpts
Query 481 ISNVDPLLLLIQWLPELDSAELQIFTADWLRRICGLNRRTRATCVNSCMTAVVLSALERHQRLHRACAESLVALLGSLGS 560
WD40-rpts
Query 561 QSLSSSELQLLLRLLRQDEPGRAHPYVGPVLCSLLGMVRKQGLESAMQYFDLSPPMAGIAVPTILRWPGSAFSFFAWLSL 640
WD40-rpts
Query 641 DQDQLGPPSKGEKRKQLYSFFTPGGTGFEAFISSAGVLVVAVCTKKEYVTVMLPDYCFCDSLWHSIGVVHVPGKRPFGQS 720
WD40-rpts
Query 721 LVYIFVDGQQKLSAPLKYPTMTEAFTSCCIGSAGHRTTTPPPSQIPDPPFSGAHPSGRSSFGAILPGWGGLLGTKPESVT 800
WD40-rpts
Query 801 KLISAGTQDSEWGSPTSLQGQLGSVMVFHEPLQATHVKALCSAGPNCISAFRSQEAELGELAPKLLLHYSPKACRNPICL 880
WD40-rpts
Query 881 DLSPNLLHGRLTGNKVVNWDIKDMINCVGGIPVLLPVLEQLTLLNPDSNPVEPSGSEFISPDSATPADGDWVILPSNRAS 960
WD40-rpts
Query 961 EARLEKNLVATFLLVIKHFLQRHPINQETLLHSHGVATLGALLQKLPAFLVDVSVLVAVQLLIEQMTYEKNTQLLLQLHT 1040
WD40-rpts
Query 1041 HLLFNFSIWNQGDFPLRIGHIQYTSTVIKDSRKQFRKKYGVQFLLDTIRLYYGSGSKDADLSEDDIKTIRASLYGLLKYY 1120
WD40-rpts
Query 1121 ISKGTTQEEIQSILGYIAAIGDEEQLCGVLDLLLTLLQTSAARDQLFLLLFEPGAAESCYALLLSNKHSDRLRELIFKLF 1200
WD40-rpts
Query 1201 ERMLKCDRVYEKSKQRLRLRDVGYSGLSLLFSDLHLTSTLIKCLLHQVLSTDTVVNYKDLMAVVQLTHKAGPSVRLTVCK 1280
WD40-rpts
Query 1281 RLYTLLQSQPDAVLQISKQVCWQGTLMRLFVRSPGSDGGSGRGDAASLGSLELSRSSGGNRLEPPLERRPLGDSVNRLNE 1360
WD40-rpts
Query 1361 ERDSVSDSRSIDSLDNGELMSLSDTPVEAHTPKTWPGKAGVLSLDLSQLDRGDSGSQTPGSMQSTPSPLENAKPFPGASS 1440
WD40-rpts
Query 1441 LNDDNFLFSDNVSLGESFNSERTEEELSRVLLEVVLCVMWRGVEGSDDSAWLDRGQVFSALTKLGTANELLLPVDHIKLS 1520
WD40-rpts
Query 1521 LMERMLEWAVTDNREASAVTLPQHTENAVRLLHVVQDFLQAEGLVNPALWTEKLLEETVTLMDGLMVWYASGTQWLQLSQ 1600
WD40-rpts
Query 1601 VGLRLLLGFMAQEDPQVCAMATAKLNGILQTKTVNSQDEACYLLGRVEGILRRSLSEERIEDTYSFLVPLLRTLLSKIHK 1680
WD40-rpts
Query 1681 LLYMELHLPSLPNTNGSPSFFEDFQQYVTSPEWRVYLDKYIIPYMKQYEIETFSQGHENMALYWKDCYEAFMLNLHRRDR 1760
WD40-rpts
Query 1761 DRGESKIRFQEQFVEPFSRRGRQENLRYNSMLKQMHTQNSGVLRQWRAARRGLFCERGPWVDKQLKDIHWKLSSAENYSR 1840
WD40-rpts
Query 1841 MRLKLVRNYNFDTHREASALRDNLGVQHKQVNAESLLLEAVKQVKVSDLEDDILELLEEDPASANQADSDEAGQKEKLVI 1920
WD40-rpts
Query 1921 SEDCELVTVVDVYPGRLELTTQHIYFYDSSAEKEEGVGQDFKWPLSQIREIHLRRYNLRRSALEIFLIDQTNYFLNFKKE 2000
WD40-rpts
Query 2001 VRNTVYSRMLLLRSLSLHATHSPQELLKSSGLTQKWVNREISNFDYLMQLNTIAGRTYNDLAQYPVFPWILSDYTSEELD 2080
WD40-rpts
Query 2081 LSDPRVFRDLSKPVAVQNERNAKAVREKYESFEDPTGTIDRFHYGTHYSNAAGVMHYLIRVEPFTSLHIQLQSGRFDCAD 2160
WD40-rpts
Query 2161 RQFHSIPATWQTLMDNPNDVKELIPEFFYFPEFLENQNGFDLGRLQISKERVNDVILPKWAKSPEDFIYKHRKALESEFV 2240
WD40-rpts
Query 2241 SAHLHEWIDLIFGYKQRGPAAVEALNVFYYCTYEGAVDLDAITDEKERKAVEGMISNFGQTPCQLLKDPHPVRLSLEELE 2320
WD40-rpts
Query 2321 KRRTRLDSCPLNIFEQLTELKSFFIEGISDNVPLVKAVVPKNQSHSFISQGSPDALVTLSQNCLMGTHGWLPYDKNISNY 2400
WD40-rpts
Query 2401 FTFIKDPTVTSPKTQRFLSGPFSPGVDVTAHLFVVSHDGKLLFSGGHWDNSLRVTSLVKGKTVGQHIRHMDIVTCLATDH 2480
WD40-rpts (_________________WD
Query 2481 FGIHLISGSRDTTCMVWQVLQQGGAPVGLSHKPVQVLYGHTDEVVSVSISTELDMAVSGSRDGTVIIHTVRRGQYMRSLR 2560
WD40-rpts 1________________) (_________________WD 2________________)
Query 2561 PPCESSLPLSIMHLAVSWEGHLVVHTCIEGKATLKDKNALHLYSVNGKHLCSSSLKEQVTDMCVSGEHVVIGSEQGFLSV 2640
WD40-rpts (________________WD 3______________
Query 2641 RDLYSLSLCVSPMAMRVPIRCVSVTKEQSHVLVGLEDGKLIVVGVGKPAEMRSGQITRKLWGSSKRLTQISSGETEYHTQ 2720
WD40-rpts _) (_________________WD 4________________)
Query 2721 EQP 2723
WD40-rpts
 4 WD40-repeats found in QUERY=ENSDARP00000025827 (Len=2723): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 31 2460-2498 6.53 384.52 0.00041 32.5% 56.72 WD 2: Seg 35 2511-2549 5.15 327.37 0.00241 40.0% 55.82 WD 3: Seg 44 2606-2642 2.79 230.08 0.04827 25.0% 41.50 WD 4: Seg 48 2646-2684 3.58 262.66 0.01783 17.5% 48.78Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2460-2498 -GKTVGQHIRHMDIVTCLATDHFGIHLISGSRDTTCMVWQ WD 2 2511-2549 -HKPVQVLYGHTDEVVSVSISTELDMAVSGSRDGTVIIHT WD 3 2606-2642 NGK---HLCSSSLKEQVTDMCVSGEHVVIGSEQGFLSVRD WD 4 2646-2684 -LSLCVSPMAMRVPIRCVSVTKEQSHVLVGLEDGKLIVVG WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |