Input parameters:

  Query = ENSDARP00000023281 (Len=938)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000023281, Len=938):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLTKQYLRYVASAVFGVIGSQKANIAFVTLRGGEKGRYVAVGACEHVFIWDVRKAEKVLILEGKKHEVTYLCPSPDGVH 80  
WD40-rpts                  (_________________WD 1_________________)   (_________________WD 2___

Query       81 IAVGYEDGGVRIFSLLNGESNVSFSGHKSAVSVIKYDALGARLVTGSRDTDVIVWDVINECGLYRLKGHKDAITQVLFLE 160 
WD40-rpts      _____________)   (_________________WD 3________________)   (_________________WD 

Query      161 SKNLLITSSKDSFVKWWDLDTQHCFKTMVGHRSEVWGMVLLNQENRLLTGSADSELRAWDIQDIEEVKELGEPQEKKVRT 240 
WD40-rpts      4________________)   (_________________WD 5________________)   (________________

Query      241 LLEDEEEDEEGPDEEPEERILSCKKAGSILREARDRVVSLVTDAKAKVLACHGLDATLEVFTVLSEEEIQRKMDRKLKKA 320 
WD40-rpts      _WD 6________________) (_________________WD 7________________)                  

Query      321 KKKAKSQEGGEEASEPVVERKLKDEIMKLANIRASSKIRSMDCLLVPNGEMKVVLLLQNNTVETYTLKTTEKNPTGNKTS 400 
WD40-rpts                               (__________________WD 8_________________)           (__

Query      401 RLTLGGHRSDVRTVAFSSDNIAILSASGDTVKVWNRSTLQVIRTMGCEYALCSIFVPGDRQIILGTKSGKIQIFDLASGS 480 
WD40-rpts      ______________WD 9________________)(_________________WD10_________________)   (_

Query      481 LLETTDAHEGALWSMCLSPDQRGIVTGGADKTVKFWDFELIKDEDSMINKRLTVKHTRTLQLDEDVLCVRFSPDQRLLAV 560 
WD40-rpts      ________________WD11________________)                      (_____________WD12___

Query      561 SLLDCTVKIFYTDTLKFFLSLYGHKLPVLCLDISHDSALIATGSADRNVKIWGLDFGDCHRSMFAHDDSVMFLQFVPKTH 640 
WD40-rpts      __________)   (_________________WD13________________)   (_________________WD14__

Query      641 LFFTAGKDKKIKQWDADKFEHIQTLEGHHREVWCLAISPNGDHIVSSSHDKSLRLWERTREPIILEEEKEMEREAEFEES 720 
WD40-rpts      ______________)   (_________________WD15________________)                       

Query      721 LAKGDDPVVPGETKGEAEPAGRKTVETVKAAERIMEAIELYREESKNLEEHKAACEAAGKKLPPLKMNPILMAFGNISPS 800 
WD40-rpts                                                                                      

Query      801 RYVLEVMKKVRSSELEVSLLVLPFPYVPDLLKLFNAYVKEGLEVELVCRCLFFLLRVHFGQITSNQMLLSVIDELRANTI 880 
WD40-rpts                                                                                      

Query      881 SKVREIRDVLGFNSAGLQFLQREIESREDVTFFADATDRFEEKRRKRRKRERVILTIT 938 
WD40-rpts                                                                

15 WD40-repeats found in QUERY=ENSDARP00000023281 (Len=938):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-52       3.39  254.82  0.02269       10.0%     52.35
  WD 2:  Seg  6    56-94       8.47  464.70  3.4e-05       32.5%     58.56
  WD 3:  Seg 10    98-136      9.31  499.37  1.2e-05       42.5%     57.69
  WD 4:  Seg 14   140-178      8.83  479.49  2.1e-05       32.5%     58.17
  WD 5:  Seg 18   182-220      8.82  478.98  2.2e-05       32.5%     57.27
  WD 6:  Seg 22   224-262      6.18  369.97  0.00064        7.5%     49.92
  WD 7:  Seg 25   264-302      6.08  365.99  0.00073       20.0%     50.23
  WD 8:  Seg 31   346-386      5.04  322.73  0.00278       10.0%     45.94
  WD 9:  Seg 35   398-435      7.03  404.93  0.00022       42.5%     51.02
  WD10:  Seg 39   436-475      6.01  362.84  0.00080       15.0%     52.55
  WD11:  Seg 43   479-517      9.55  509.34  8.5e-06       37.5%     55.79
  WD12:  Seg 48   540-571      5.38  336.94  0.00179       25.0%     47.56
  WD13:  Seg 51   575-613      8.95  484.38  1.8e-05       27.5%     55.84
  WD14:  Seg 55   617-655      8.74  475.64  2.4e-05       30.0%     55.54
  WD15:  Seg 59   659-697      9.34  500.42  1.1e-05       35.0%     52.11

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     SAVFGVIGSQKANIAFVTLRGGEKGR-YVAVGACE-HVFIWD
   WD 2   56-94     -AEK-VLILEGKKHEVTYLCPSPDGV-HIAVGYEDGGVRIFS
   WD 3   98-136    -GES-NVSFSGHKSAVSVIKYDALGA-RLVTGSRDTDVIVWD
   WD 4  140-178    -ECG-LYRLKGHKDAITQVLFLESKN-LLITSSKDSFVKWWD
   WD 5  182-220    -QHC-FKTMVGHRSEVWGMVLLNQEN-RLLTGSADSELRAWD
   WD 6  224-262    -IEE-VKELGEPQEKKVRTLLEDEEE-DEEGPDEEPEERILS
   WD 7  264-302    -KKA-GSILREARDRVVSLVTDAKAK-VLACHGLDATLEVFT
   WD 8  346-386    IMKL-ANIRASSKIRSMDCLLVPNGEMKVVLLLQNNTVETYT
   WD 9  398-435    -KTS-RLTLGGHRSDVRTVAFSSDNI-AILSASGD-TVKVWN
   WD10  436-475    RSTL-QVIRTMGCEYALCSIFVPGDR-QIILGTKSGKIQIFD
   WD11  479-517    -GSL-LETTDAHEGALWSMCLSPDQR-GIVTGGADKTVKFWD
   WD12  540-571    ---------LQLDEDVLCVRFSPDQR-LLAVSLLDCTVKIFY
   WD13  575-613    -LKF-FLSLYGHKLPVLCLDISHDSA-LIATGSADRNVKIWG
   WD14  617-655    -GDC-HRSMFAHDDSVMFLQFVPKTH-LFFTAGKDKKIKQWD
   WD15  659-697    -FEH-IQTLEGHHREVWCLAISPNGD-HIVSSSHDKSLRLWE

   WD40 Template    TGEC-LRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD