WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000016280 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000016280 (Len=677) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000016280, Len=677): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDVTRLVSSGDCLKIWDSSSMTVVEQFNPHSATHPVAQVCWSSSNQYVVSASSIGDKLVVSSLKSSPVPVMELGEGKKQ 80
WD40-rpts (__________________WD 1_________________) (_____________
Query 81 TRVSLNSTSQFLVSGGLDNTVNIWDLKTKRLHRTLKDHKEEVTCVSFNGGDSYIASGSTSGDIILHSITTNLSSKPFGHG 160
WD40-rpts ____WD 2________________) (_________________WD 3________________)(____________
Query 161 PNVPIHDLRYSLVKRSLLGTVSDSGSVALWDANTQKELHLFEGAHKAPCSGLAFSPANDLLFVTVGLDKKIVCYDTSSKI 240
WD40-rpts _______WD 4___________________) (__________________WD 5_________________) (__
Query 241 VFRNKQVESPLTAIDFTPDGAGLVVGSTQGRIYLYDLRNLSAPVKINTAHKTSVTCIRFQNSTSKLKSTKSSSKSSQSNK 320
WD40-rpts _______________WD 6________________) (_________________WD 7________________)
Query 321 RISVKLGSSQQTGPSTPTSTVPPIVSGSEFPGDGQAQVPGPSAEVFSREAEGQLSQDQMPNVEKFSSIGRNSLNLDIFSP 400
WD40-rpts (____________________WD 8___________________)(________________________WD 9_
Query 401 LNDGFKSHGFADTSRNGGSIDVFSREAEGQQTADRFRVGRNSLDIFSPVRDDYKGHRLSDVSSGKKDFEYLPHFPGGSSQ 480
WD40-rpts _______________________) (________________
Query 481 RKTPLGTPGSRCYSPSVVQTPPIKEEESTTTPPQQTDVQNGTKVEKSNGVRQEYDAITTPPAAQSTRIQSVQPQFNTPEP 560
WD40-rpts _WD10________________)
Query 561 SQRRDLSTQLTYDSPISRAPASPAAAAAAAAPAAAVDSAPLTSVQMNFVRNMIHEALEDFRDTCHRDIINLQVEMVRQFY 640
WD40-rpts
Query 641 IQLNEIHGLIEKYSVNDSLVEEIERLKEENKRLRANY 677
WD40-rpts
 10 WD40-repeats found in QUERY=ENSDARP00000016280 (Len=677): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 22-62 6.02 363.38 0.00079 22.5% 56.77 WD 2: Seg 7 67-105 8.96 484.74 1.8e-05 30.0% 55.28 WD 3: Seg 11 109-147 9.06 488.80 1.6e-05 35.0% 56.62 WD 4: Seg 15 148-191 6.11 366.87 0.00071 20.0% 48.50 WD 5: Seg 19 195-235 6.24 372.47 0.00059 27.5% 55.91 WD 6: Seg 23 238-276 8.74 475.56 2.4e-05 32.5% 56.47 WD 7: Seg 27 281-319 6.41 379.37 0.00048 15.0% 39.69 WD 8: Seg 31 326-370 6.26 373.37 0.00058 22.5% 34.38 WD 9: Seg 34 371-424 5.86 356.70 0.00097 22.5% 27.89 WD10: Seg 39 464-502 5.70 349.97 0.00120 15.0% 1.04Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 22-62 -MT--------VVEQ-----FNP-HSATHPVAQVCWSSSNQY-V-VS------ASSIGDKLVVS WD 2 67-105 -SP--------VPVM-----ELG-EGK--KQTRVSLNSTSQF-L-VS------GGLDNTVNIWD WD 3 109-147 -KR--------LHRT-----LKD-HKE--EVTCVSFNGGDSY-I-AS------GSTSGDIILHS WD 4 148-191 ITT--------NLSS--KPFGHG-PNV--PIHDLRYSLVKRSLL-GT------VSDSGSVALWD WD 5 195-235 -QK--------ELHL-----FEGAHKA--PCSGLAFSPANDL-LFVT------VGLDKKIVCYD WD 6 238-276 -SK--------IVFR-----NKQ-VES--PLTAIDFTPDGAG-L-VV------GSTQGRIYLYD WD 7 281-319 -SA--------PVKI-----NTA-HKT--SVTCIRFQNSTSK-L-KS------TKSSSKSSQSN WD 8 326-370 LGS--------SQQTGPSTPTST-VPP--IVSGSEFPGDGQA-Q-VP------GPSAEVFSREA WD 9 371-424 EGQLSQDQMPNVEKF-----SSI-GRN--SLNLDIFSPLNDG-F-KSHGFADTSRNGGSIDVFS WD10 464-502 -GK--------KDFE-----YLP-HFP--GGSSQRKTPLGTP-G-SR------CYSPSVVQTPP WD40 Template TGE--------CLRT-----LSG-HTS--GVTSVSFSPDGKR-L-VS------GSEDGTIKVWD |
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