Input parameters:

  Query = ENSDARP00000008347 (Len=1261)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000008347, Len=1261):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEERARSRLLRSKATLEQDIKASYLMDHMISDGVLTNDEEAKVLSKATRKEQAVALLETLLRKDNRAYISFYNALIRESY 80  
WD40-rpts                                                                                      

Query       81 GDLASLLHSDLPLLSPEGEKSFADGVSPSVQAILSVGGVPQRPVVFVSRPPLLNLIREMLYRLRDTPGWVTVFGMAGSGK 160 
WD40-rpts                                                                                      

Query      161 SVMAAEVVRDRSLIKECFPDGVHWLSVGQCERADLLVRMQSLCFRLEQCQSSDTSQRPPSTVEEAKERLRFLMLRRFPRS 240 
WD40-rpts                                                                                      

Query      241 LLILDDVWDSSSLRSFDIQCRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEILALYVNGKMHKLPEQARSIVSECK 320 
WD40-rpts                                                                                      

Query      321 GSPLVVSLIGALLREFPDRWSYYLRQLQQKQFKRIRKSSSYDYEALDQAMDASLQVLEAEHQELYRDLSVMQKDIKVPAK 400 
WD40-rpts                                                                                      

Query      401 VLSVLWGLELEEVEDVLQEFVNKSLLFRDCNQRPYRYYLHDLQLDFLAEQNRDQIAELHKKMVRQYQRFYSKRPPDSADK 480 
WD40-rpts                                                                                      

Query      481 DSLYWYQFIPYHMAKAGLSKELYSLMFSLDWVKEKARIMGSAHLINDYVEYGEILDKENSEVRVQFQEFLSLNGHHLEQR 560 
WD40-rpts                                                                                      

Query      561 PFPDVVQLALSQPDRSEVYRQALMQAQKRASRGQIYLNWVNKNIEEGLSRLVMHPHQGAVYYACFSKDGSKIASCGASKA 640 
WD40-rpts                                                    (_________________WD 1____________

Query      641 LRVFKSTSGEKLLELQAHEEDVLCCAFSPDDRHIATCASDKKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLLA 720 
WD40-rpts      ____)   (_________________WD 2________________)   (___________________WD 3______

Query      721 TCSNDKFTNTKLWNPNKKTSQNTMFGHMEPVNHCCFSPNDLYLATSSSDGSLKLFEVSSANEWKSIDVDSFFPESDEEIK 800 
WD40-rpts      _____________)   (_________________WD 4________________)           (____________

Query      801 AMVKCSTWSADGSQIICAARNTVFVFDVETSDLLLELKTSRLSTIQFCHACPNSSLLAVALSHYTVELWNFESSKKKAEC 880 
WD40-rpts      _____WD 5_________________)(___________________WD 6__________________)   (______

Query      881 SGHLSWVHCVQFSPDGSLLLSSSDDQTIRLWETDRVHTSSAVALKRDTDVLFSHSDATIIAPDSSNRLQVLSGSTGAVVL 960 
WD40-rpts      ___________WD 7________________)(_________________WD 8_________________)   (____

Query      961 ESEELSSRIRCSCISRNAAFVALGSEDGTVQVIEVPSSKASVKLSGHTKTVHHCQFTDDCEILITSSEDSTIRVWKWRTG 1040
WD40-rpts      _____________WD 9________________)   (_________________WD10________________)  (_

Query     1041 ECMVLQGHMEPVRKFHLLSSSSSPRLFSWSFDGTVKVWDLTRGQMLQDLVCHEGAVLSCDVSSDGRLFATTSANRTAKVW 1120
WD40-rpts      _________________WD11_________________)   (_________________WD12________________

Query     1121 SSASWKMIFLLEGHKDCVRSCRFSWDNKRLATGDDNGEIRLWSMLDGALLKICSRDTKDSMDSYHGGWVTDLHFSPDNRV 1200
WD40-rpts      )   (_________________WD13________________)           (________________WD14_____

Query     1201 LVSTGGYIKWWSVESGEALQTFYTMGGNLKKIHVSPDFSTFITVDSIGILYILKRLEGEGT 1261
WD40-rpts      ___________)   (_________________WD15________________)       

15 WD40-repeats found in QUERY=ENSDARP00000008347 (Len=1261):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   607-645      7.66  430.96  9.7e-05       22.5%     56.62
  WD 2:  Seg 16   649-687      9.42  503.87  1.0e-05       32.5%     57.71
  WD 3:  Seg 20   691-734      5.23  330.54  0.00218       27.5%     53.96
  WD 4:  Seg 24   738-776      9.22  495.35  1.3e-05       30.0%     55.88
  WD 5:  Seg 29   788-827      5.49  341.55  0.00155       17.5%     41.42
  WD 6:  Seg 32   828-870      7.01  404.43  0.00022       15.0%     55.64
  WD 7:  Seg 36   874-912      9.83  520.71  6.0e-06       45.0%     57.18
  WD 8:  Seg 40   913-952      6.63  388.58  0.00036       15.0%     48.34
  WD 9:  Seg 44   956-994      8.11  449.74  5.4e-05       25.0%     58.13
  WD10:  Seg 48   998-1036     9.42  503.67  1.0e-05       40.0%     58.15
  WD11:  Seg 52  1039-1079     7.30  416.23  0.00015       40.0%     51.73
  WD12:  Seg 56  1083-1121     9.07  489.19  1.6e-05       35.0%     58.44
  WD13:  Seg 60  1125-1163     9.55  509.19  8.5e-06       37.5%     57.66
  WD14:  Seg 65  1175-1212     6.99  403.52  0.00023       37.5%     37.46
  WD15:  Seg 68  1216-1254     7.50  424.32  0.00012       20.0%     55.64

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  607-645    -GL---SR-LVMH-PHQGAVY--YACFSKDGSK--IASCGASK--ALRVFK
   WD 2  649-687    -GE---KL-LELQ-AHEEDVL--CCAFSPDDRH--IATCASDK--KVKLWN
   WD 3  691-734    -GV---LI-REFEVEHEEQIN--HCQFTNTGRRVLLATCSNDKFTNTKLWN
   WD 4  738-776    -KT---SQ-NTMF-GHMEPVN--HCCFSPNDLY--LATSSSDG--SLKLFE
   WD 5  788-827    VDS---FFPESDE-EIKAMVK--CSTWSADGSQ--IICAARN---TVFVFD
   WD 6  828-870    VETSDLLL-ELKT-SRLSTIQ--FCHACPNSSL--LAVALSHY--TVELWN
   WD 7  874-912    -SK---KK-AECS-GHLSWVH--CVQFSPDGSL--LLSSSDDQ--TIRLWE
   WD 8  913-952    TDR---VH-TSSA-VALKRDT--DVLFSHSDAT--IIAPDSSN--RLQVLS
   WD 9  956-994    -GA---VV-LESE-ELSSRIR--CSCISRNAAF--VALGSEDG--TVQVIE
   WD10  998-1036   -SK---AS-VKLS-GHTKTVH--HCQFTDDCEI--LITSSEDS--TIRVWK
   WD11 1039-1079   -TG---EC-MVLQ-GHMEPVRKFHLLSSSSSPR--LFSWSFDG--TVKVWD
   WD12 1083-1121   -GQ---ML-QDLV-CHEGAVL--SCDVSSDGRL--FATTSANR--TAKVWS
   WD13 1125-1163   -WK---MI-FLLE-GHKDCVR--SCRFSWDNKR--LATGDDNG--EIRLWS
   WD14 1175-1212   RDT---KD-SMDS-YHGGWVT--DLHFSPDNRV--LVSTG--G--YIKWWS
   WD15 1216-1254   -GE---AL-QTFY-TMGGNLK--KIHVSPDFST--FITVDSIG--ILYILK

   WD40 Template    TGE---CL-RTLS-GHTSGVT--SVSFSPDGKR--LVSGSEDG--TIKVWD