Input parameters:

  Query = ENSDARP00000008223 (Len=833)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000008223, Len=833):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEKWEDGFEDRRFKIGRNNKGFAQKKDMSERVASCGNLYDTNTLLLRYCNDDNVSAGSGMEMDDRLSHLEQRVQLQEDE 80  
WD40-rpts                                                                                      

Query       81 IQLLKAALADALRRLGCCEEITQASNKKSGPTKVRQILQALPSKPLTNGYVQTKRLSGFPSSPSSPKKEVLMSIKRKSMS 160 
WD40-rpts                                                                               (______

Query      161 TERLSTVKKEMADSRSRTTSSSSSTCGKRDSKTKECSFNADEGYVRMFLRGRPITMHIPDQLRYSYSLESKVALPERKLK 240 
WD40-rpts      __________WD 1_______________)        (________________WD 2________________)    

Query      241 LQWVYGYRGRDCRSNLYLLPTGEIVYFNASVVVLYNVEEQQQRHYLGHNDDVKCLAIHPDMVTIATGQVAGTSKDGKALP 320 
WD40-rpts                                          (_______________________WD 3________________

Query      321 PHVRVWDSVSLNTLHVIGAGVFDRAVTCVAFSKSNGGAHLCAVDDANDHILSVWDWQKEKQLAEVKCSNDSVLGAVFHPM 400 
WD40-rpts      ______)   (____________________WD 4___________________)   (_________________WD 5

Query      401 EANLIVTCGKSHINFWTVEGSTLTKRQGLFEKHEKPKYVLCIAFAENGDAITGDSSGNIYIWAKGGNRISKVVSGAHEGG 480 
WD40-rpts      ________________)        (________________WD 6________________)(________________

Query      481 IFSLCVLKDGTLVSGGGKDRKVLLWDHDYRKKSEMEVPEAFGPVRTLAEGKQDELFVGTTKNAVLRGSFSGSLTPIVQGH 560 
WD40-rpts      ___WD 7__________________)(___________________WD 8__________________)(__________

Query      561 TDELWGLDVHPSTEQFVTCGQDKQVCLWDTCSHLPLWTKAIEDPARSVGFHPSGTVVAVGTMTAKWLVLDTDTRDLVSMH 640 
WD40-rpts      _______WD 9_________________)  (_________________WD10________________)   (______

Query      641 TDGNEIISVVKYSPDGAYLAVGSHDNFVYIYSVTENGKKYSRVGKCTGHSSFVTHLDWSTDSQFIVTNSGDYEILYWEAS 720 
WD40-rpts      ___________WD11________________)(____________________WD12____________________)  

Query      721 SGKHITNNDIVRNLEWATSTCVLGFSVFGIWPDGADGTDINAVCRSHDKNLLASADDFGKVHLFSNPCSQPRAPSHIYGG 800 
WD40-rpts                           (___________________WD13___________________)      (________

Query      801 HSSHVTNVAFLHDDSHLISTGGKDTSILQWVLA 833 
WD40-rpts      _________WD14_________________)  

14 WD40-repeats found in QUERY=ENSDARP00000008223 (Len=833):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   154-190      4.07  282.86  0.00956       15.0%     19.03
  WD 2:  Seg  7   199-236      4.20  288.14  0.00812        5.0%     16.83
  WD 3:  Seg 14   277-327      6.94  401.20  0.00024       32.5%     53.49
  WD 4:  Seg 18   331-375      5.67  348.87  0.00124       27.5%     47.24
  WD 5:  Seg 22   379-417      7.52  425.18  0.00012       17.5%     57.81
  WD 6:  Seg 26   426-463      5.69  349.70  0.00121       20.0%     47.55
  WD 7:  Seg 30   464-506      7.67  431.47  9.5e-05       25.0%     55.68
  WD 8:  Seg 34   507-549      4.87  315.90  0.00344        5.0%     50.50
  WD 9:  Seg 38   550-589     10.09  531.33  4.3e-06       22.5%     54.70
  WD10:  Seg 42   592-630      6.94  401.46  0.00024       20.0%     55.49
  WD11:  Seg 46   634-672      8.53  466.84  3.2e-05       22.5%     57.80
  WD12:  Seg 50   673-718      8.23  454.78  4.6e-05       32.5%     52.22
  WD13:  Seg 56   742-785      6.41  379.52  0.00048       15.0%     43.99
  WD14:  Seg 60   792-831      6.73  392.73  0.00032       32.5%     48.46

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  154-190    ------------I----KRKSMS--TERLSTVKKEMADSR----SRT-TSSSSST----------CGKRD
   WD 2  199-236    -----N------A----DEGYVR--MFLRGRPITMHIPDQ----LRY-SYSLESK----------VALPE
   WD 3  277-327    VE---E-----QQ----QRHYLG--HNDDVKCLAIHPDMV----TIA-TGQVAGTSKDGKALPPHVRVWD
   WD 4  331-375    -L---N------T----LHVIGAGVFDRAVTCVAFSKSNGGAHLCAV-DDANDHI----------LSVWD
   WD 5  379-417    -E---K------Q----LAEVKC--SNDSVLGAVFHPMEA----NLI-VTCGKSH----------INFWT
   WD 6  426-463    -R---Q------G----LFEKHE--KPKYVLCIAFAENGD----AI--TGDSSGN----------IYIWA
   WD 7  464-506    KG---G---NRIS----KVVSGA--HEGGIFSLCVLKDGT----LVS-GGGKDRK----------VLLWD
   WD 8  507-549    HDYRKK------S----EMEVPE--AFGPVRTLAEGKQDE----LFV-GTTKNAV----------LRGSF
   WD 9  550-589    SG---S------L----TPIVQG--HTDELWGLDVHPSTE----QFV-TCGQDKQ----------VCLWD
   WD10  592-630    -S---H------L----PLWTKA--IEDPARSVGFHPSGT----VVA-VGTMTAK----------WLVLD
   WD11  634-672    -R---D------L----VSMHTD--GNEIISVVKYSPDGA----YLA-VGSHDNF----------VYIYS
   WD12  673-718    VT---ENGKKYSR----VGKCTG--HSSFVTHLDWSTDSQ----FIV-TNSGDYE----------ILYWE
   WD13  742-785    VL---G------FSVFGIWPDGA--DGTDINAVCRSHDKN----LLA-SADDFGK----------VHLFS
   WD14  792-831    -R---A------P----SHIYGG--HSSHVTNVAFLHDDS----HLISTGGKDTS----------ILQWV

   WD40 Template    TG---E------C----LRTLSG--HTSGVTSVSFSPDGK----RLV-SGSEDGT----------IKVWD