WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000005227 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000005227 (Len=1642) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000005227, Len=1642): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVAEMDVLRNFEVQWVQGFTNGTFRFVDKKTVCYTCGNFIVFLNVETKERKTLQSPGSGIGAFTASGQRRCIAFSDLGLK 80
WD40-rpts (__________________WD 1___________
Query 81 PSIFIYKYPELELTSELKGTTKLGYTALALCDTGPYLVSASPMPDHIITLWNWESGLPLCSHSLLDEDISALVFNPMNWC 160
WD40-rpts ______) (__________________WD 2__________________) (_________________WD 3___
Query 161 QICAIKSKSLTIWNVERCDNYHLMKPSAVNLPGTDGSAIECEPNQSHLLNGKLTYLGPQMPTSAIAGLIGDQADNFVPLK 240
WD40-rpts _____________) (_________________WD 4________________)
Query 241 LIKPRLCPSAICWSISSDLYVGCKEGFLLCVNPETLHVSVLYKPQTEVTTGNSEMPMQEGSFQSLVLQDSKLFAAGMESV 320
WD40-rpts (___________________WD 5______________
Query 321 LRSIQIKGNKLEVVQTWALEEAASAMCFSPDGETLLLTSNTGCVYRFKPLLKDKAVKVLDVLCGDFVTVAPVYTDRSICL 400
WD40-rpts ____)(___________________WD 6__________________) (_____________WD 7__
Query 401 SVREAGVVQLWTLDDGLCMGSISLQTHVTSMACCPIAQYIVVGTATGDVLFVEMTTKQKPRLVHRVHLYHVPVDHLVFDQ 480
WD40-rpts ___________)(__________________WD 8_________________) (_________________WD
Query 481 GGNCLITGASDSRVFVLDSRPSKGFDIIGWIEAPGAIVGLSTQYHQESKQIKVLVLCNKSEKEISEGNVLLLLTLFAQQL 560
WD40-rpts 9________________) (________________WD10__
Query 561 TESTSCMDAHGCLRKEVFDSCVLELPNSLCSCVLAVNKIFGYCQQRKVLQRFSIPENGENPNNVVQLIPEKETGGHLLSP 640
WD40-rpts ______________) (_____________
Query 641 AFLQLSPHHTWLASVGRDGLLRICEISEMDRYVQLQCHSCWQGGVGSVCFTPDSQTIITSGLRDGSLVCSRLKLSGVGKA 720
WD40-rpts ____WD11________________)
Query 721 NAATQYSQSVADSFESVVSSENTVLTKMTDRDSFHTGEVSLKGKMSHEAEQEENYFTSPTSYTWLDGKLDAVLQEEAQQY 800
WD40-rpts
Query 801 AETKKNLRRNIKVLRDTIKAMMEENESLADIEKLEQQEFNLDVEEQQRLQLEGDQEVNRVRKEIEMENLAKSYQREVLKR 880
WD40-rpts
Query 881 ECWDSMQVKGKAIKAFHSENEVKNYPMKERTAKELEELRMVENMRQIEQEDSQLQEGVLDTLFGDKEEEVSLTESPALTG 960
WD40-rpts
Query 961 SLSSLYGGVNPYLYNQFNLHVREQKINQITLLKDVIYNVKSAFNKEFEAVYKQKEQEIHRTKEKNKRIFQIMAKLGISET 1040
WD40-rpts
Query 1041 LWEPRLTDNECPERALTVTDSEIKVEKYLTLEQKEKEAKLREEEERQRLAAKSENMRDQGLSVMMGGVLELKKEDVLRME 1120
WD40-rpts
Query 1121 VPQPEFMSKPEAQWTEEERKSFKEFEKKAKELSEEQEKYRKTLETEMKKLLTSIKEATQMFDEKLAKLFERKVKSEMVIY 1200
WD40-rpts
Query 1201 QEELKIANLVLSIQTEEEILTREKQLSFKLEKARIKKNEIGEELKKHKETVDEFREAYDNTVAEDKLLDKGFRKEFYDVP 1280
WD40-rpts
Query 1281 GHSIDQLYKLYKRRPRVQRMKTQTENNPFKEGAAPSDGLSLMMKAMEELDAPEHMLEGLDPAVWERFCLARRAKVESEQK 1360
WD40-rpts
Query 1361 VKLKALTLAEMQAFLQRRIDEDDEAQLEIKNLIDELNGLCDEKMRFRLDSMVQIVLQQGQVEVEAGEFIADYSNALLIQR 1440
WD40-rpts
Query 1441 KVVEDLNSTIRALGDQKIATMVECKDFRKGIIQQEWEHRRMRMQLEDLSNKARNIQTLRITQDIQDYLNETNNDNRVSKQ 1520
WD40-rpts
Query 1521 LTTLERTLDLQKTAHQKKIEICKKQKRQLDRQVAKMQEKNAALDLRVAEMEITVAERRNFYEAAAMEDNQETESDKNYQD 1600
WD40-rpts
Query 1601 ILLRKKLLAIARAQSEELLLLRAELEKLRMKNFPSLSQLHYN 1642
WD40-rpts
 11 WD40-repeats found in QUERY=ENSDARP00000005227 (Len=1642): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 47-87 4.34 293.83 0.00681 15.0% 55.17 WD 2: Seg 9 91-132 5.13 326.47 0.00248 35.0% 50.42 WD 3: Seg 13 136-174 6.59 386.91 0.00038 15.0% 52.48 WD 4: Seg 17 189-227 4.04 281.61 0.00994 15.0% 2.81 WD 5: Seg 22 283-325 3.14 244.56 0.03106 7.5% 40.14 WD 6: Seg 26 326-368 5.83 355.56 0.00100 20.0% 51.86 WD 7: Seg 30 381-412 3.38 254.30 0.02305 15.0% 43.71 WD 8: Seg 33 413-453 5.92 359.07 0.00090 22.5% 49.32 WD 9: Seg 37 460-498 7.06 406.19 0.00021 20.0% 54.02 WD10: Seg 43 538-575 3.82 272.53 0.01315 2.5% 24.39 WD11: Seg 49 627-665 6.40 379.19 0.00048 20.0% 38.06Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 47-87 -TK---ERKT-----LQ-SPGS-GIGAFTAS-GQRRCIAFSDLGL--KPSIFIYK WD 2 91-132 -LE---LTSE-----LK-GTTKLGYTALALC-DTGPYLVSAS--PMPDHIITLWN WD 3 136-174 -GL---PLCS-----HS-LLDE-DISALVFN-PMNWCQICAI--K--SKSLTIWN WD 4 189-227 -VN---LPGT-----DG-SAIE-CEPNQSHL-LNGKLTYLGP--Q--MPTSAIAG WD 5 283-325 KPQ---TEVTTGNSEMP-MQEG-SFQSLVLQ-DSK--LFAAG--M--ESVLRSIQ WD 6 326-368 IKGNKLEVVQ-----TW-ALEE-AASAMCFS-PDGETLLLTS--N--TGCVYRFK WD 7 381-412 ------------------VLCG-DFVTVAPVYTDRSICLSVR--E--AGVVQLWT WD 8 413-453 LDD---GLCM-----GSISLQT-HVTSMACC-PIAQYIVVGT--A--TGDVLFVE WD 9 460-498 -PR---LVHR-----VH-LYHV-PVDHLVFD-QGGNCLITGA--S--DSRVFVLD WD10 538-575 NKS-----EK-----EI-SEGN-VLLLLTLF-AQQLTESTSC--M--DAHGCLRK WD11 627-665 -LI---PEKE-----TG-GHLL-SPAFLQLS-PHHTWLASVG--R--DGLLRICE WD40 Template TGE---CLRT-----LS-GHTS-GVTSVSFS-PDGKRLVSGS--E--DGTIKVWD |
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