Input parameters:

  Query = ENSDARP00000005085 (Len=1252)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000005085, Len=1252):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVRERLRQNISAAFYRHGLLCASYPVPIILFTSASILTCCYPLLKLPLPGTGPVEFTTGVRDYSIPSHESQGDLSERPD 80  
WD40-rpts                                                                                      

Query       81 WYRGPPVAYIQQVLVKAAVSPWGNSLVPVDVFRSPLGRVFSLLDEIRNHVYTDSSLHRSLEALCLQVTDLLPGLRRMQAV 160 
WD40-rpts                                                                                      

Query      161 LPEHGCLLVSPGNYWQNRRDLFDADPDLLKTVHQHEPKGLHTSATLRDLLFGVPGKQTGVSLYSKKRVVTYTVTIALSSY 240 
WD40-rpts                                                                                      

Query      241 DARFVGSLRARLKQLHPSANCTLREDHMVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKIDMVRSKWGLALAAVVTV 320 
WD40-rpts                                                                                      

Query      321 LSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSNESWSIMKNMATELCII 400 
WD40-rpts                                                                                      

Query      401 LIGYFTFVPAIQEFCLFAVVGLVSDFFLQMFFFTTVLSIDIRRMELADLNRRLPAEAGMPPPKPGTLRPRETPPPPRPSP 480 
WD40-rpts                                                                                      

Query      481 HTITLQTPAFRNLRLPKRLRVVYFLARTRLAQRIIMVGTVIWIGILVYTDPAGLRTFLAAQVSEQSPLGEAGLPPHLGVA 560 
WD40-rpts                                                                                      

Query      561 PVFPGGHPTSTLSVLPAPEPTPLPENQSQGHRAARPGVAPVSSPQITWGSEDEELWRRLSFRHWPSLFSYYNITLAKRYI 640 
WD40-rpts                                                                                      

Query      641 SILPVIPVTLHLSPQEAIDTRHPQDTQHAPPPPPSIKTSDLQTDLTLYKVAALGLFAGVLLVLLLFCLYRVLCPRNYGQN 720 
WD40-rpts                                                                                      

Query      721 GVPHGRRRRGDLPCDEYGYSPPISEISPLLLRGHSMDIECLASDGMLLASCCLAGQIRVWDAQTGDCLTVIPNKGLRRSS 800 
WD40-rpts                                     (____________WD 1____________)          (________

Query      801 SNGCWEHRDGWDHISAFEVEGIATDFREPGGAMGGPDVDIFAIRRRTTPARPALFGDQPDLTPLIDTNFGALPPSQALSG 880 
WD40-rpts      ________________WD 2_______________________)   (_________________WD 3___________

Query      881 SGFDFGSLVEKAYQEHEPSPVLVFPPSPPASQQRRRSLGDQPVLPPELPPQSSADWDSSVWAMELRGNLIATGRSTGKLE 960 
WD40-rpts      _____)                                     (_________________WD 4_______________

Query      961 LWDAVEGSLRCSNEDGVSGITALAFLNNSRIVAARLNGSLDFFTVEINKPLGLLQYRGPPGRGSLPPSPCYSSEDVISCH 1040
WD40-rpts      __)   (________________WD 5________________)          (_________________________

Query     1041 LTRSVQCAHQKPITVLKAAAGRVVTGSQDHNLKSKVYRLEDSCCLFTLQGHSGGITAIYIDQTMVLASGGQDGAICVWDV 1120
WD40-rpts      ___WD 6____________________________)     (________________WD 7________________) 

Query     1121 LTGSRVSHVYGHRGDVTSLVCTTSCIISSGLDDLICIWDRSTGIKLYSIQQEVGCGASLGVISENLLVTGGQGCVSFWDL 1200
WD40-rpts        (________________WD 8_______________)   (________________WD 9_______________) 

Query     1201 NYGDLLQTVYLGPSSEGQSVRQLLVLDNAAIICDFGSELSLVYVPSVLEKLD 1252
WD40-rpts        (___________________WD10___________________)      

10 WD40-repeats found in QUERY=ENSDARP00000005085 (Len=1252):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   752-781      4.66  307.28  0.00449       27.5%     35.94
  WD 2:  Seg 19   792-844      3.69  267.17  0.01552       17.5%     24.70
  WD 3:  Seg 21   848-886      5.52  342.60  0.00150       15.0%     17.31
  WD 4:  Seg 24   924-963      5.63  347.14  0.00130       17.5%     36.05
  WD 5:  Seg 27   967-1004     6.38  378.24  0.00050       20.0%     51.08
  WD 6:  Seg 32  1015-1076     2.95  236.47  0.03976       20.0%     29.59
  WD 7:  Seg 34  1082-1119     8.02  445.79  6.1e-05       42.5%     54.72
  WD 8:  Seg 38  1123-1159     6.88  398.91  0.00026       27.5%     50.66
  WD 9:  Seg 42  1163-1199     5.47  340.74  0.00159       17.5%     52.74
  WD10:  Seg 46  1203-1246     4.00  279.73  0.01053       22.5%     41.90

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  752-781    ------------------------------------------RGHSMDIECL---ASDGMLL-------AS-CCLAGQIRVWD
   WD 2  792-844    PNK------------------------GLRRSSSNGCW----EHRDGWDHIS-AFEVEGIATDFREPGGAM-GGPDVDIFAIR
   WD 3  848-886    -TP------------------------ARP------AL----FGDQPDLTPL-IDTNFGALP-------PS-QALSGSGFDFG
   WD 4  924-963    -LP------------------------PEL------PP----QSSADWDSSVWAMELRGNLI-------AT-GRSTGKLELWD
   WD 5  967-1004   -GS------------------------LRC------SN----EDGVSGITAL-AFLNNS-RI-------VA-ARLNGSLDFFT
   WD 6 1015-1076   QYRGPPGRGSLPPSPCYSSEDVISCHLTRS------VQ----CAHQKPITVL-KAAAG--RV-------VT-GSQDHNLKSKV
   WD 7 1082-1119   -SC------------------------CLF------TL----QGHSGGITAI-YID-QTMVL-------AS-GGQDGAICVWD
   WD 8 1123-1159   -GS------------------------RVS------HV----YGHRGDVTSL-VCTTS--CI-------IS-SGLDDLICIWD
   WD 9 1163-1199   -GI------------------------KLY------SI----QQEVGCGASL-GVISEN--L-------LV-TGGQGCVSFWD
   WD10 1203-1246   -GD------------------------LLQ------TVYLGPSSEGQSVRQL-LVLDNAAII-------CDFGSELSLVYVPS

   WD40 Template    TGE------------------------CLR------TL----SGHTSGVTSV-SFSPDGKRL-------VS-GSEDGTIKVWD