Input parameters:

  Query = ENSDARP00000003699 (Len=993)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003699, Len=993):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLKPSWVNHNGKPIFSVDIHPDGTKFATGGQGEDSGKVVIWNMAPVLREEDEKNENIPKLLCQMDNHLACVNCVRWSN 80  
WD40-rpts      (___________________WD 1___________________)               (_________________WD 

Query       81 NGLYLASGGDDKLVMVWKRAAFIGPSTVFGSSSKLANVEQWRCVTILRNHTGDVMDVAWSPHDVWLASCSVDNTIVIWNA 160 
WD40-rpts      2________________)          (_______________________WD 3______________________) 

Query      161 RKFPEIVMTLKGHTGLVKGLTWDPVGKYIASQADDHSLKVWRTMDWQLETNITKPFSECGGTTHVLRLSWSPDGQYLVSA 240 
WD40-rpts         (_________________WD 4________________)           (__________________WD 5____

Query      241 HAMNNSGPTAQIIERDGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSTPKPSCPYCCCAVGSKDRSLSVWLTSLKRPL 320 
WD40-rpts      _____________)   (_________________________WD 6_________________________)(______

Query      321 VVIHDLFDKSIMDITWTLNGLGLLVCSMDGTVAFLDFSQDELGDPLNEEEKNAIHQNIYGKSLAITMESQLSTTIIENPE 400 
WD40-rpts      _____________WD 7__________________)   (_________________WD 8________________)  

Query      401 MLKYQQERQGNQNANVAQGSGPENQTPKLTNVLNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSPALFN 480 
WD40-rpts                                                                                      

Query      481 SVPILPGSSASTQLTPQISSDSNTANSLGLRPSHDPSTTSPNKTAEENKDSATAPVNSIGMKSTLLLTSASKIEPMKALD 560 
WD40-rpts                                                                                      

Query      561 SRFTERSKATPGVTSVPITIGITPLDRAKDSSSVKEPKGKDETSSDSEDKIMNKTLSMEGRPRKDAKMMMPISQPFPQTP 640 
WD40-rpts                                                                                      

Query      641 VSVKEELPRLATPAVVLKLPTPSIQKSFSTQVGTDAVTYLEVENEVSVVSGARLSQLKWRREGREWDTLLPSRIIIATGS 720 
WD40-rpts                                                                 (________________WD 9

Query      721 SDVVAVACEDRTLSVFTACGRRLIPSIMLPAPMSALHCSGHFVMALMASATLSVWDVQKQTALVKNESLNPILSGTDATV 800 
WD40-rpts      ________________)(_________________WD10________________)        (_______________

Query      801 SQSLITQQGVAVVSLSNGKTYCFNSSLETWNLIADKQDSLVQCADFRNCLSSQDVLGSMGPLALTQGRNLSAGRLASRLS 880 
WD40-rpts      ______WD11____________________)                                                 

Query      881 STPHHLQQGMTLAFLENQLSSALMLLSASEYRHWLLIYARFLVNEGYEHRLRELCQDLLGPVHKSSSSSWESTVLGLRKR 960 
WD40-rpts                                                                                      

Query      961 DLLTEVLPVIGQNLRFQRLFTEYQDQLELLRLK 993 
WD40-rpts                                       

11 WD40-repeats found in QUERY=ENSDARP00000003699 (Len=993):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       6.03  363.81  0.00078       20.0%     51.50
  WD 2:  Seg  5    60-98       7.79  436.50  8.1e-05       30.0%     53.23
  WD 3:  Seg  9   109-159      8.72  474.78  2.5e-05       40.0%     55.74
  WD 4:  Seg 13   164-202      9.14  492.37  1.4e-05       37.5%     54.93
  WD 5:  Seg 18   214-254      4.85  314.95  0.00354       30.0%     40.96
  WD 6:  Seg 21   258-313      5.83  355.29  0.00101       30.0%     58.26
  WD 7:  Seg 25   314-356      6.82  396.48  0.00028       20.0%     58.55
  WD 8:  Seg 29   360-398      5.51  342.37  0.00151       10.0%     31.34
  WD 9:  Seg 40   700-737      3.55  261.33  0.01857       20.0%     44.79
  WD10:  Seg 44   738-776      4.75  310.80  0.00403       15.0%     33.23
  WD11:  Seg 48   785-831      4.52  301.44  0.00538       27.5%     37.73

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MK-----------LLKP-SWVNHNGKPIFSVDIHPD-----------------GTKFATGGQGED------SGKVVIWN
   WD 2   60-98     -P-----------KLLC-Q-MDNHLACVNCVRWSNN-----------------GLYLASGG---D------DKLVMVWK
   WD 3  109-159    FGSSSKLANVEQWRCVT-I-LRNHTGDVMDVAWSPH-----------------DVWLASCS---V------DNTIVIWN
   WD 4  164-202    -P-----------EIVM-T-LKGHTGLVKGLTWDPV-----------------GKYIASQA---D------DHSLKVWR
   WD 5  214-254    --------------KPF-S-ECGGTTHVLRLSWSPD-----------------GQYLVSAH---A--MNNSGPTAQIIE
   WD 6  258-313    -W-----------KTNM-D-FVGHRKAVTVVKFNPKIFKKKQKNGSTPKPSCPYCCCAVGS---K------DRSLSVWL
   WD 7  314-356    TS--------LKRPLVV-I-HDLFDKSIMDITWTLN-----------------GLGLLVCS---M------DGTVAFLD
   WD 8  360-398    -D-----------ELGD-P-LNEEEKNAIHQNIYGK-----------------SLAITMES---Q------LSTTIIEN
   WD 9  700-737    RR-----------EGRE-W-DTLLPSRIIIATGSSD-------------------VVAVAC---E------DRTLSVFT
   WD10  738-776    -A-----------CGRR-L-IPSIMLPAPMSALHCS-----------------GHFVMALM---A------SATLSVWD
   WD11  785-831    KN-----------ESLNPI-LSGTDATVSQSLITQQ-----------------GVAVVSLS---NGKTYCFNSSLETWN

   WD40 Template    TG-----------ECLR-T-LSGHTSGVTSVSFSPD-----------------GKRLVSGS---E------DGTIKVWD