Input parameters:

  Query = ENSDARP00000003198 (Len=685)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003198, Len=685):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEFKVHRVRFFEYVPSGIRALAFNQHNERMAAAKMNGSVEIFHCSDRFFQEKIIPGREQAGIEGLTWVGERLFSAGLNG 80  
WD40-rpts      (___________________WD 1___________________)   (_________________WD 2___________

Query       81 VITEYDLTNQRVKYTIDAYGGPIWAITGNQQGTHLAVGCEDGTVKLFEVTEDKIQFERNLDRQKGRIISLSWHPSGSKIA 160 
WD40-rpts      _____)   (_________________WD 3________________)(___________________WD 4________

Query      161 AGMMDMIQVFNVETGHSKHRILVDRGYGTSRGKECVVWSVVYLSDGTIISGDSVGMVKMWRDDTGTLIKSHNITKSDVLS 240 
WD40-rpts      __________)            (________________WD 5________________)   (_______________

Query      241 LSVSQNEDSIVAGTSEGFVVQFQFLSMVLENNEKDWVRTRTFRNHTHDVRAVAEITTAVVSGGMDTQLVVRPLLDKHEVK 320 
WD40-rpts      __WD 6________________)            (________________WD 7_______________)(_______

Query      321 SSASKLRKIQFPHRSLVSCARKAGTLLFQYPGHLELWRLGESEGEGIPGSSLLLKRKPEKLLHLKVKGEDHIRCSAVSPC 400 
WD40-rpts      _________WD 8________________)                            (________________WD 9_

Query      401 GEWIAYSTTSSLRLYKLHCDSNNVSITKISKLPKVLGSASQLCFSSDSTHLFSASTQSSVHMVSLSQPECKFVATFKTKS 480 
WD40-rpts      _______________)         (_________________WD10________________)(_______________

Query      481 GSHQAIHLLAASEDGKWLASANIDNEVHIYNLQTRKAHCTVPIYSSAVSAMAIHPTTNCLFMVHADQQIFEFSIEQKEYT 560 
WD40-rpts      ______WD11____________________)   (_________________WD12________________)       

Query      561 DWSRLVQRQGLHRIWLERDTPCLNVTFNQKNPSHVILHDMYMFCIIDQSQPLPDSKSQFLNQLTLRSLPEEQRKSYSHAF 640 
WD40-rpts                                                                                      

Query      641 KVCKTFKELLCVDVMGDQSLVVVERPLEDITAQLPAPIKQKKFAT 685 
WD40-rpts                                                   

12 WD40-repeats found in QUERY=ENSDARP00000003198 (Len=685):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       8.05  447.30  5.8e-05       20.0%     57.39
  WD 2:  Seg  5    48-86       7.26  414.71  0.00016       17.5%     57.31
  WD 3:  Seg  9    90-128      8.61  470.37  2.8e-05       22.5%     58.38
  WD 4:  Seg 13   129-171      6.81  396.08  0.00029       27.5%     53.83
  WD 5:  Seg 18   184-221      7.04  405.46  0.00021       30.0%     41.30
  WD 6:  Seg 21   225-263      8.31  458.06  4.2e-05       22.5%     54.40
  WD 7:  Seg 25   276-312      5.91  358.93  0.00091       27.5%     51.45
  WD 8:  Seg 29   313-350      4.78  312.26  0.00385       12.5%     34.35
  WD 9:  Seg 34   379-416      5.85  356.25  0.00098       12.5%     55.31
  WD10:  Seg 38   426-464      7.12  408.88  0.00019       17.5%     54.14
  WD11:  Seg 42   465-511      7.85  439.03  7.5e-05       25.0%     53.72
  WD12:  Seg 46   515-553      7.63  429.69  0.00010       17.5%     58.06

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MGE-------FKVHRVRFFEYVPSGIRALAFNQHNERMAAAKMNGSVEIFH
   WD 2   48-86     -RF-------F----QEKIIPGREQAGIEGLTWVGERLFSAGLNGVITEYD
   WD 3   90-128    -QR-------V----KYTIDAYGGPIWAITGNQQGTHLAVGCEDGTVKLFE
   WD 4  129-171    VTE---DKIQF----ERNLDRQKGRIISLSWHPSGSKIAAGMMD-MIQVFN
   WD 5  184-221    -DR-------G----YGTSRGKECVVWSVVYLSDGT-IISGDSVGMVKMWR
   WD 6  225-263    -GT-------L----IKSHNITKSDVLSLSVSQNEDSIVAGTSEGFVVQFQ
   WD 7  276-312    -WV-------R----TRTFRNHTHDVRAV--AEITTAVVSGGMDTQLVVRP
   WD 8  313-350    LLD------------KHEVKSSASKLRKIQF-PHRSLVSCARKAGTLLFQY
   WD 9  379-416    -EK-------L----LHLKVKGEDHIRCSAVSPCGEWIAY-STTSSLRLYK
   WD10  426-464    -IT-------K----ISKLPKVLGSASQLCFSSDSTHLFSASTQSSVHMVS
   WD11  465-511    LSQPECKFVAT----FKTKSGSHQAIHLLAASEDGKWLASANIDNEVHIYN
   WD12  515-553    -RK-------A----HCTVPIYSSAVSAMAIHPTTNCLFMVHADQQIFEFS

   WD40 Template    TGE-------C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD