WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000003197 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000003197 (Len=2861) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000003197, Len=2861): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASAGDSAVQIPIRGIRMKFAVLAGLLEAGEVSNRDTVETIFNLLVGGQFDLEMNFIIQETESIICMVELLDKCDSTCQA 80
WD40-rpts
Query 81 EVWSMFTAVLKKSLRNLQACTDIGLIQLVLQRIDRAETMIADLMVDMLGVLASYSITVKELKLYFSKLKGEQGQWPPHAV 160
WD40-rpts
Query 161 KLLSVLKSMAQRNGPDSFFSFPGKSAAAIALPPIAKWPYQNGFTFHTWLRLDPINNINVDKDKPYLYCFRTNKGLGYSAH 240
WD40-rpts
Query 241 FVGGCLIVTSLKSKAKGFQHCVKYDFKPQKWYMVTIVHIYNRWKNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSS 320
WD40-rpts
Query 321 ETADANRVFCGQMGAVYLFSEALSAAQILAIYQLGPGYKGTFKHKAESDLLFAEHHKMLLYDGKLSACIAFTYNPRATDA 400
WD40-rpts
Query 401 QLCLESSPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDFLQHSGDELDTSVCCTLLSFVMEL 480
WD40-rpts
Query 481 LKGSVAMQEQVLACKGFLVIGYSLEKSSKVHVTRPVLDIVLAFARYLSNLPTGVMLLKQLCDHILFNPTIWIHAPAKVQL 560
WD40-rpts
Query 561 VLYTYLATEFISTVTIYNAIRRVGTVLQVMHTLKYFYWVVNPLDRSGITPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMK 640
WD40-rpts
Query 641 DHGIKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPGSMVQAFDQRNGIRVIFKLLASTSEGIRVQALKVLGYFLK 720
WD40-rpts
Query 721 YLSPKRKSEVMLAHGLFSLLTERLMLHSNQFTVTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAALLKN 800
WD40-rpts
Query 801 APPEAESMEVRRIFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCFINPKNSEEQKITEMVYAIFRILLYHAIKYEWGG 880
WD40-rpts
Query 881 WRVWVDTLSITHSKVTFEQHKENLARMFLEYQRMGSEGGSESRIRTISGVSQDSQFLASANGELHTEEKAPSTVIELRVE 960
WD40-rpts
Query 961 EQDNDQTADNEEMQTQIPVTVSNILVRDEEERQTDTVATSLEMQDRDKDEQYAVKEPKKDNEIKHMDDNHKTGDEDREQM 1040
WD40-rpts
Query 1041 ENVKTEGRVEEESSNLSIKDDTDSPQTETDKNAKDATEAVKMSDEGKTSNAENEQNVQVEDEKKDLGDSTLEAVKEDSTQ 1120
WD40-rpts
Query 1121 KSSEVLVHEETSTTGASVVNEDSTDVSSASNFVKVSDDSTEDSSFVSATTGETDDHGVEREDGGKEKENKSETDKDEKLM 1200
WD40-rpts
Query 1201 ENEKTVGIQDSPAPMVEVDLNQSSSPEETKPQTEGHGDVEAEQTTTEQKSKAEVSSSAESISQDAANNQDSPKVAGTDNT 1280
WD40-rpts
Query 1281 ANKTKEIKIARLDVSSVASDTERLELKDTSATNPSANQAAPTSPTGQSNEGSSSARSTMFRIPEFKWSHMHQRLLTDLLF 1360
WD40-rpts
Query 1361 SIETDVQMWRSHSTKTVMDFVNSSENVVFVHNTVHLISQVVDNLIMACGGILPLLSAATSSSHELENIEPSQGLAVEASL 1440
WD40-rpts
Query 1441 MFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQCLRLVCAMAVRNCLECQQHTLSKSGAESSRGQQSLLGAAKSI 1520
WD40-rpts
Query 1521 PAQSPVDIVTGGMSPIRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPHNDRRNTQRS 1600
WD40-rpts
Query 1601 QSVRSTESVQSDLENGLSPLHRDSGIEDEKASDIQSNVKAQTGPDAVSEALSTLSDEVRRGQEDRDSKGKNVNVKDILRS 1680
WD40-rpts
Query 1681 LVSAPSDDIMVDPSLIPPGFLGAVSEASRDQSIQFHSFDRSVVVAPKKAGGAPSPGMSTVSASASVPSATAASSGGTPVN 1760
WD40-rpts
Query 1761 SVSVVSAGETVQSTESTPGGTSTSSNLPSVPALSPMTQTSTPNMSISERLEHALEKAAPLLREIFVDFAPFLSRTLLGSH 1840
WD40-rpts
Query 1841 GQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAED 1920
WD40-rpts
Query 1921 IQKHAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTSTQLIQKIVNILTDKHGAWGSSAFSRPREFWRLDYWEDDLR 2000
WD40-rpts
Query 2001 RRRRFIRNPFGSTHSEATLKAAAEHAPEEDVLKGKQSIRSSVLGNQNSESELLLEDDDTLSSLEEKELENLTGPVNLSTS 2080
WD40-rpts
Query 2081 AQLVAPAVVVKGTLSITALELYFEVDEEDPSFKNIDPKILAYTEGLHGKWLFTEIRAVFSRRYLLQNTALEVFMANRTAV 2160
WD40-rpts
Query 2161 MFNFPDAATVKKVVHCLPRVGVGTNVGLPQTRRISLASPKQLYKASNMTQRWQRREISNFEYLMFLNTISGRTFNDLNQY 2240
WD40-rpts
Query 2241 PVFPWVITNYDSEELDLTLPSNYRDLSKPIGALNPKRAAFFSERFESWEDEQVPKFHYGTHYSTSSFTQMWLLRIEPFTT 2320
WD40-rpts
Query 2321 FFLNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELIPEFYYLPEMFVNSNNYNLGVMDDGTVVSDVELPPWAKSPEEF 2400
WD40-rpts
Query 2401 VRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAIRALNVFYYLTYEGAVNLSSISDPMLREAVESQIRSFGQTPCQLLI 2480
WD40-rpts
Query 2481 EPHPPRSSAMQVTPLMFTEQMQQDVIMVLKFPSNSPVTHVAANTQSGLTNAAVITVTANRLFAVNKWHGLTGHQTSSVQD 2560
WD40-rpts
Query 2561 QQYQLPVEIDPLIASNVGAHRRQISDLLDQSIQVNAQCFVITADNRFILLCGFWDKSFRVYSTDTGKLTQIVFGHLDVVT 2640
WD40-rpts (______________
Query 2641 CLARSESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGESAGTEFVTPRAILTGHDCEVTCASVCAELGLVISGCREGPCL 2720
WD40-rpts _____WD 1__________________)(_________________________WD 2______________________
Query 2721 VHSMNGDLLRTLEGPDGCMRPRLVLSSTEGHCVIYYDKGHFCVFSINGKLLGHMEVEDNIKAMLLSKDGQYLLCGGDAGV 2800
WD40-rpts __) (_________________WD 3_____________
Query 2801 LNVWQIHDLKQLFTYPGCDAGIRSMAIAHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY 2861
WD40-rpts ____) (_________________WD 4________________)
 4 WD40-repeats found in QUERY=ENSDARP00000003197 (Len=2861): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 39 2626-2668 5.11 325.58 0.00255 30.0% 51.40 WD 2: Seg 43 2669-2723 3.32 251.71 0.02495 25.0% 53.11 WD 3: Seg 51 2766-2805 4.28 291.59 0.00730 22.5% 53.47 WD 4: Seg 54 2809-2847 3.29 250.46 0.02593 22.5% 48.84Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2626-2668 -G---------------KLTQIVFGHLDVVTCLARSESYIGGDCYVLSGSRDATLLLWY WD 2 2669-2723 WNGKHSSIGESAGTEFVTPRAILTGHDCEVTCA----SVCAELGLVISGCREGPCLVHS WD 3 2766-2805 IN---------------GKLLGHMEVEDNIKAM----LLSKDGQYLLCGGDAGVLNVWQ WD 4 2809-2847 -L---------------KQLFTYPGCDAGIRSM----AIAHDQRCIITGMASGSIVLFY WD40 Template TG---------------ECLRTLSGHTSGVTSV----SFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |