Input parameters:

  Query = EG_PFL2460w (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL2460w, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYNVPLIKNLYPDPSNNLYGDLRICSRATETCGIACSAGYIAVPWQVEGGGMIGVIRLENQVRNPPVIKLKSHTSPILDL 80  
WD40-rpts                                                               (____________________WD

Query       81 SFNPCYSEILASCSEDMSIRIWEIRHEDENVNEVKDPLCILNGHKKKVNILSWNPMNYFILSSTSFDSSVNIWDIENEKK 160 
WD40-rpts       1____________________)           (_________________WD 2_________________)(_____

Query      161 AFEINMPKKLSSLQWDIGGNLLSGTCQNKQIHIIDPRKQEICNSFLIHDGGKSTKCIWIDGFGGEDKCILTTGFSKNNMR 240 
WD40-rpts      _____________WD 3_________________)   (_____________________WD 4________________

Query      241 ELKLWSLKNTTSPLTTITLDNAASPLLPHYDESVGMIYLIGKGDGNCRYYQYSQGSIRKVDEYKSCLPFRSFGFLPKRMC 320 
WD40-rpts      _____)(____________________WD 5___________________)                             

Query      321 DVYKCEIGRVYKNENNTDIRPISFYVPRKNSSIFQEDLYPPIIMRDPERSTNKWIDGINLDIKRVSIKDLTEDDLLITKK 400 
WD40-rpts                                                                                      

Query      401 FKQLPKESKSILIQDNNNPKKGSVMRQFTKKFTFRKKKETTEIQGEIMGETKSSIEADFEPQECKENKKGNKLNEAPKFL 480 
WD40-rpts                                                                                      

Query      481 FACEDVEICHLKDNVDDDDYLIVNGTNEPYEETVIKTNENENYKENNDSSIQSIRSNSKSIEKNDDDNNNNNNDNTLQSE 560 
WD40-rpts                                                                                      

Query      561 ENEEHLKHISSIHEENNFKNFFKNVLDNILDMKMCKSTATVL 602 
WD40-rpts                                                

5 WD40-repeats found in QUERY=EG_PFL2460w (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    58-103      7.26  414.38  0.00016       37.5%     44.84
  WD 2:  Seg  8   115-154      6.13  368.05  0.00068       32.5%     51.49
  WD 3:  Seg 12   155-195      6.06  364.98  0.00075       12.5%     51.08
  WD 4:  Seg 16   199-246      3.49  258.63  0.02018       20.0%     32.48
  WD 5:  Seg 20   247-291      4.17  287.00  0.00841       17.5%     50.94

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-103    LENQ-----VRNPPVIKLK-SHTSPILDLSFNPCYS---------E-ILASCSEDMSIRIWE
   WD 2  115-154    -KDP-----LC-----ILN-GHKKKVNILSWNP-MN---------YFILSSTSFDSSVNIWD
   WD 3  155-195    IENE-----KK-----AFEINMPKKLSSLQWDI-GG---------N-LLSGTCQNKQIHIID
   WD 4  199-246    -QEI-----CN-----SFL-IHDGGKSTKCIWI-DGFGGEDKCILT-TGFSKNNMRELKLWS
   WD 5  247-291    LKNTTSPLTTI-----TLD-NAASPLLPHYDES-VG---------M-IYLIGKGDGNCRYYQ

   WD40 Template    TGEC-----LR-----TLS-GHTSGVTSVSFSP-DG---------K-RLVSGSEDGTIKVWD