WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PFL2405c [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFL2405c (Len=3119) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFL2405c, Len=3119): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKLLLFFFISSIFLQLTSGKRILNFDNIIKHLKESKLLPEDIPHVLENDIIIVPPYLIYKYKGKIYHLHNNVDLTLINHP 80
WD40-rpts
Query 81 EEDSCDKEEIWESPFPPKVPEPERPHEPEMEPQVEPEPGPLPEEVREPEPEPEAEPEKELEMEEQEEVIEADMVLDEETG 160
WD40-rpts
Query 161 IKIPKKTEQDVLEVSKFREEYELPNVVELTPEEKEKNNILHFAGNKSTAFNLKEIINYKKDESLMNSLSSSFDHFYTPNV 240
WD40-rpts
Query 241 EERNLSNAYNVDINDYYDLLRALHILCKDEDNKLYTINRIPKDELLFFLKHAYVNIYNSLKKYILLNGYNFEDYIYTSEN 320
WD40-rpts (______________________
Query 321 FTLDQIFKDYFFLSNDDTNENGSFNNIIESIKYIKKAIEKLNVKRIEEKIKYFFQIYEVHAFDFKLLHYIFSRNQLLNYS 400
WD40-rpts __________________________WD 1_______________________________________________)
Query 401 EDDLIHHAVDIMNITRIDISPRVISALFMYFLNKVNIFLVPQYVTRNRNDFTLLLEHNDLLLRTEIIYRDFLKHFFKHKT 480
WD40-rpts
Query 481 PHVHLKKNNHDNAYQLVPWSQVLFSEFNSTYDFLNFKYMIILFHDSYHAFVDYFEGDDKLNQVLNDNKENKTIDNLDKFF 560
WD40-rpts
Query 561 NELLNLFLIENVGILSTLEEYFVSTVKQVGRVLSDDHDIDSKEYTENYFTPEEEEQALKDFKEDEASVHHLDHYDNNMDP 640
WD40-rpts
Query 641 YYEYQGEFGSYEEEEDELRKFKEDEPEPWPLDESPHIEHGTLHDDELNPFQEEKKDDESFYTSEDEDTLDHSHEKEDDVS 720
WD40-rpts
Query 721 HPEHEDHNEGYIPHTYDDDSFFTDEEDDEGDEVNEENVPLNHEEENVPLNHEEDNFPLNHEEDNFPLNHEEENVPLNHEE 800
WD40-rpts
Query 801 ENVPLNHEEENVPLNHEEENYNSFLSYQKYDERDISPHNVNQHKKEIFHHRNITPYHVNHHNQHMDQHDHHIDHHNHHID 880
WD40-rpts
Query 881 HHNHHIDHHNHHIDHHNHHIDHQDHHIDHHNHHIDHHNHHIDHHDHHIDHHDHHIDHHNHHIDHKSNNQFLQKHQNYVRG 960
WD40-rpts
Query 961 HSSFITISEGEENHDNRELRKKIEANLKEEWKKRFNEQQEQRERKKKAEEDEMNETIQKHDMETSKLEKKEEVDEVTQDE 1040
WD40-rpts
Query 1041 EFDKQYAIDDQEELEFLRTRDSEGSESDVPKDKVKPFPDGRSPDSFYYNTAISSFHEKMEELYNTSISSSLNYVKEINRK 1120
WD40-rpts
Query 1121 FDDVYKELKSKTYPKFDDLTSQTKTNCNKLFQKLNETIKDKEYQKNIQSYKNKVIDILDDIQKKANGKYIIIQNLIIEKI 1200
WD40-rpts
Query 1201 DIYKGDVVRLSDRKFYKNFRKVLGKRKMKMLEDFRAQFKGAIRFIKDLTTTYMEEEYTKVLEDIYMEKKKYYKEEYSKMR 1280
WD40-rpts
Query 1281 RIISSNLDYEVNKQIKEHYHKVDTISEHKFQEIRQHMRDKIENTIHELYKEMYVQIQIDLTNYYHQLENIHSELLQALQQ 1360
WD40-rpts
Query 1361 NKNIPRHLNVLEKKLEITKRKKKNKPDISTSSHATDEQQVSDTLIRGAHNHGDIIKGEDNDEVLLIEQIQSLKTKMGDNQ 1440
WD40-rpts
Query 1441 NQVGSILEKLNNLSDQYQLLQDKLNVVEDIYKNLRNFKHYIEKLHKESKINREKFITKVDVLSNVYSTLEYMVKFLLHDF 1520
WD40-rpts
Query 1521 QEWSFEKDELEKHLYELEERKKYITLEIQIRDTLSTNIQNGEGDHINNNNNNNNVRNNLKKQVLKDLDLEISKLKGHILE 1600
WD40-rpts
Query 1601 VDIKKNIALEQINYLTNNTNETVPDVIRDLMPAPRIVPVSEDIYDYITWVRDNTAVINNTLRHFVMTFDQKIYDYDDHLI 1680
WD40-rpts
Query 1681 FVYNIKELIYKENLADEKYNANYYYEMNRFYLHLEEFFYILKHYVELRKIQDLGEVAIPSFEENIKTKGSLIDVHQKDKD 1760
WD40-rpts
Query 1761 GTQIIEYLERNVLHIYSILRNIKNNNIHLYHYLVPDLSNILIDPEEFKKMSNGEQPELNKLHKYLLDAYTNLKKEGQVVD 1840
WD40-rpts
Query 1841 QIYVEYINFHNHFEHTYDKLLWYKTILKRYIERSKKIYEKSYGTYTVSHIQLYDNKKDGHDNHHDQHHDNHHDQHHDHHH 1920
WD40-rpts
Query 1921 DQHHDHHHDHDQHHNNNYNYNNISFLRSFVQLNYHNTLHERSDHIFLKSPILLQYDPEKIVESNEKRHIRVIRDQNNFPY 2000
WD40-rpts
Query 2001 KLGEVKETYVLNKSIHDKFVKSKKLDEYKKYMNNKLYDIVHEHKRGKGKLYLFEKEELEKYQLIFGGKTLIKGSLLNFLS 2080
WD40-rpts
Query 2081 HININLNKNLLINQINDTINEYLKKRNLSYNSIIELIKYLQKNPSVIHFIDLIKLGKNILERSNVLYIKKEWFTLYLYTL 2160
WD40-rpts
Query 2161 LELLGIEVNMEHVDVHEERGLKNEHNNYISEKSYALHYLYVLRNYNKRIEIKNQIQNYVLQFLLPEHKFDMEDYQPILYE 2240
WD40-rpts
Query 2241 FLKAINDSMDGDSITYNEFKKKNPEVYTTLVSVIKKGIEDFFYTMFNKIIEEHPELKEEIYFDDNYNDEEKDRFRYANYT 2320
WD40-rpts
Query 2321 WERANLNEILTLYFYVLNPGLRNVIYKHFIKVNIKCLKDYKNFDFKEIFSFLNYDDIGATFLNYLKEHELFEIPPLIIFL 2400
WD40-rpts
Query 2401 RFFFHEKNEELFTFNSIRYKINSYFEGKSLDRKTKEMIARLVYSFFMRISYLSVSYFDHDIFKIINKSDLNIIILFHTII 2480
WD40-rpts
Query 2481 NKINYLLYCGTEKLFIERYAPTNLFVQNRIFKIDAVKVFHHFIYSLPPYMRNVVFHFFKSNQFIDVTKKLIIKFLQHSHS 2560
WD40-rpts
Query 2561 LLDITNHKDGHFYQLKNNTYKLETFLFSWKYNFTKNKNIIEPTFTKFIENKPVFKNMPLLYNRRIKYDSINEKLQYKEEL 2640
WD40-rpts
Query 2641 DLHDMIDNESFHQLLDLLNKESITLEQLSFLFSRYITEHANIKDFPKLFMFKKYVTYVQDEKFFINLYEYLYNYLHKEFG 2720
WD40-rpts
Query 2721 LPQPIYELYYVFIKTFIEYILLPEKLTQEEKSQNVLNYDLQNKYMNFHHFVQKLCSCLFNFYYYDEIYECQPFGFFTKEE 2800
WD40-rpts
Query 2801 FSYEQQIFNILQQPFINISPIIKHNYIHDDYYMYEKDLNGNYLSSNINNNNNNNNINNIDSNYVNRRDKNGDYIHGTNIN 2880
WD40-rpts
Query 2881 SDILYHFIKQYIPLVEPSDEEHLQIEVFKFKYFTLEITKFVLRHILKKLPFNYLIHMNWNDTYIHIDHIINNLFLHFFKK 2960
WD40-rpts
Query 2961 NKAHLLQQNQLQGLTHKINFENNLGKDHTKDEYLSKHIPQSAQNYDRNKFSGTINNLLKDPNNLPPTYRHIKYYMDHYIL 3040
WD40-rpts
Query 3041 QYSLHNHMLFKYLHNIFQHIDQYKTYFPTLAELYLYIDKRVTIINVINNSFLYKRIHTRDVIHTFLLLCHEIGLDLYEL 3119
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PFL2405c (Len=3119): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 298-398 3.45 257.33 0.02100 17.5% -8.21Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 298-398 NSLKKYILLNGYNFEDYIYTSENFTLDQIFKDYFFLSNDDTNENGSFNNIIESIKYIKKAIEKLNVKRIEEKIKYFFQIYEVHAFDFKLLHYIFSRNQLLN WD40 Template TG----ECLRTLSGHTSGVTSVSFS-----------PDGKRLVSGS--------------------------------------ED--------GTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |