Input parameters:

  Query = EG_PFL2110c (Len=1846)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL2110c, Len=1846):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MILDKFKNIVNLSNSNTEKEEGKNAEINENNDPNTQLAHEPSIVEADEKTFFDEMLGAPQYTYDEFLQVLKNPIEERGDT 80  
WD40-rpts                                                                                      

Query       81 EDMKKHWGYPRRWKVILWDLHIQNYMNNDFNAFVDFDFGGNREECRIQRGSTMKIYAKGKTKNCLRTPVVTNVATEQKKN 160 
WD40-rpts                                                                                      

Query      161 MNFRNVFEYRGSYLDLENEKLRIRVWEYKQFTLNKLEGIYEEPLLSFAVGEIYNETTLYKFIKDSRVKRCRLYFQLYFQE 240 
WD40-rpts                                                                                      

Query      241 LYDFELSFLNWSFSDLLSSSYIQAKSYNYLSNKNNVKKRYIDDTSCNIFPHMCKNFKRFHKKKIYRKVRNYDIDKNFSFN 320 
WD40-rpts                                                                                      

Query      321 TALSDDSDERKNKNDRTIKNLEKLFVRNLTLMQNIEENEDMSYKNLQNINLPNPRVTITLSHTPKGHEGLNIISIEQKSI 400 
WD40-rpts                                                                                      

Query      401 RFPIWENLGEIYFRGTLRDLDVSYLNIKVEDMSAPKSAREIGTCQISLKGIVDYPYVMHELEAPSWLVKEAKYEGWENKL 480 
WD40-rpts                                                                                      

Query      481 NEWKLGTVEGKVIINRVPRYRQRGDIYHIDSKQPYLIVHIFNIDKIITVDNIKELDTYVEVSFDETSRRTRLMKKTLSPN 560 
WD40-rpts                                               (_____________________WD 1_____________

Query      561 YDSQISIPLRFNNKNDINYENLSKKGLIYIDVWGKSEDIVYIGGISISPYEIFFNEKNVRRNKTKLEHIDLETNVKITYD 640 
WD40-rpts      ________)                                                                       

Query      641 TVVYRGCKKLCFLHDDQRMSNIHFSIWTYPDILGNSTNQKKIVAPVSFNTTMNFPIKLAEKYNKLKKLFMEVLKTIKSIP 720 
WD40-rpts                                                                                      

Query      721 ENCTDVNTSTRFYNYELINQRKEKHFLPTLITSIKSPYCAESMNAIFHYVRCIPFIHKKENIIFTPDFTLQLKGGNALDH 800 
WD40-rpts                                                                                      

Query      801 SLLLCSLFLGIPVLAFVCFGTLWDKQKHSWVATFEYNDEKNYGIVKFWETTTGNVYILKKRFIDHNRLKGLELKLKESKY 880 
WD40-rpts                                                                                      

Query      881 KSHLRNGFLQRYENNTDINYIKEQTKRHIKQLFKNRINDIPIGGPSLPYKTIDLIFNHKNIYVNLQHSSPLNIWYDYWKF 960 
WD40-rpts                                                                                      

Query      961 DFWFPFSSIEYNLQPSFTIKSFTHKMEDMELDKIAKELRTNIEKNINIYRASRNLSTRWNRDETLEIFLQVGLELLHQLN 1040
WD40-rpts                                                                                      

Query     1041 TSRKEDVLLAKLKIEDWKKALYHKVPQSHRLLGFPYHFNTYKSKFISDKLISTLAILESRDRSLCLSLAVCLYSLPGNFI 1120
WD40-rpts                                                                                      

Query     1121 SCYIYIITCVKITQRELRKMEIIKEKAQRMAEIKNSQKKKKSSDDQNIDIKTMDDVEEKETFSSTNLDDTLHDEHTDIDT 1200
WD40-rpts                                                                                      

Query     1201 EKKKHEKDNYKNKKIKNTKLKDANIDNEEKDDHHHITDKKVSKSSDLIHSFDKNDISKNTFDKEEFINNLDKDKKYSSFK 1280
WD40-rpts                                                                                      

Query     1281 KGNVVNKKVSIKNEPSINIYEDHKIYDDENISNNIDNMENNQDEIYNLRQGKTIINEFQQVKKPQKYTINEKRDDIKTKK 1360
WD40-rpts                                                                                      

Query     1361 KRSKEKKKQDKLEFEKLIQSNAYFEQEKKKLQEDIKKLEKDKEQFQKEKIRREEKEKQLLLEEKIKLQKEKELFENEKLE 1440
WD40-rpts                                                                                      

Query     1441 RKMSYMLKINELEKKKNERNKMEKSYKRMIQKDKEKKKKKESRDKIRRGEEEKMSADENMKEEQKMREEQKVGEEQKVGE 1520
WD40-rpts                                                                                      

Query     1521 EQKVGEEQKLREEQKMREEQKMREEQKMREEQKMREEQKVREEQKMREEQKMREEQKMREEQKVREEQKLREEQKMREEQ 1600
WD40-rpts                                                                                      

Query     1601 KMREEQKMREEEKIREEEQMKREKKMRREEKKKRVQEPIKIDEIQVYDIIKNEKMKKKEEKEEKKRKKKKEDIEDKYKIG 1680
WD40-rpts                                                                                      

Query     1681 KEASLDENNNERQIKSKNIQEISDYEYKNIKENKNLNKFDEKLDLNQIYSKASNFYDNQEKKRRTIKVHANRKENSDSTF 1760
WD40-rpts                                                                                      

Query     1761 SHIDDSIKNKKEYLEDSNIARYLYEKRKHDLIGKGNYNFDEPHYGKKMNNVAYQDIKGSNLFKGFIEEPSSKKSPQKKKI 1840
WD40-rpts                                                                                      

Query     1841 VIVRKN 1846
WD40-rpts            

1 WD40-repeats found in QUERY=EG_PFL2110c (Len=1846):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   522-569      3.07  241.38  0.03423       20.0%     22.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  522-569    NIDKIITVDNIKELDTYVEVSFDETSRRTRLMKKTLSPNYDSQISIPL

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRL--------VSGSEDGTIKVWD