Input parameters:

  Query = EG_PFL1935c (Len=1032)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1935c, Len=1032):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNTNEWSTIDNTHYGKQKISNMLWSNDDILKDNVVCSGYLGLIAVLLNKDKLDNYKKEDNLKIYTNIGRLISSCRLNYDG 80  
WD40-rpts                                                                         (____________

Query       81 LICFGWNKNNELVLLFKDNIVRVYSCFCEKIFVFSLDENIKNEGISYGSICEDGIIIITEKLNIYVNYGFSGTNCIKYPN 160 
WD40-rpts      ____WD 1________________)                                                       

Query      161 VELKGKPYCVSHIDEDQLNDELNIEQNYFDTKPNNDILRLNIKNYITNTFEKKESTTQNLNSKNNVLIESKENYNIKWEQ 240 
WD40-rpts                                                                                      

Query      241 MQHNQMKQQSGARTENNGEKKNATNNINNNDNYYFNNKMHKRILIKTTAYDLNNKTDVDATEKIKTKEKQNKEKNDKKKK 320 
WD40-rpts                                                                                      

Query      321 KNKTNNNNNNNNNNKELNIHLLITLCNGGFVLVNKYHYKYYDMDCSHPYINMSISKSGTILAFLADNGIIKIYLINNLNK 400 
WD40-rpts                                        (_________________WD 2_________________)      

Query      401 CIEETVLDNKKTIKQIVWCGDDCLAVYIPMITPSNYIQHMLFIGGPQNQWIPYQYRHDLFLIGDLYGVKIISKEHFEYIS 480 
WD40-rpts                                                                                      

Query      481 RIRKSTFNIFSIGSCTPSAMLFYSYEKYKNGNICLDDEIRAFNNNLHIAIEECLNAATHEYDDNIINLLLKTCLFGKNFM 560 
WD40-rpts                                                                                      

Query      561 KTNYDSKKYLLCCLFLRICMNVRKPPLDIFITAAELQYITIPTFVHYLAKRKEYFLAYRICEYAGIKTDNILIEWCKEKI 640 
WD40-rpts                                                                                      

Query      641 EKSIELTDEQLCSAITEKIGNKKNMDYSFIAFMAAKCLRPQLATVIIQYEENKKKQIDMLLKLANYRLAIEKAILSKDIE 720 
WD40-rpts                                                                                      

Query      721 LVYMCIVNILNQEKLNANGEKELNTLLHVLNSNNNMGNMNSNNNNLNNNNNNNNNNNNNNNNNSNNSNSISMHASNCFYV 800 
WD40-rpts                                                                                      

Query      801 YCKKTKQYNLLKEFYEKNGQHSQAAFVTLDLAFSKKNTEQKKTWLAYSAGFLTTDQMNSHIKFVHTSIMNNIDLLNYQKE 880 
WD40-rpts                                                                                      

Query      881 LEMKYNKKLVAGYPHKIQGLSLMKTVEYTLSIGEFLDADNIFKKFKISEPKFWRCKIHTLAKNKYFDELYNFANYRVSPI 960 
WD40-rpts                                                                                      

Query      961 GMDYFIECVHEYGSKQLTVKLIEKNKDLNSQYKWYTKLNMKKEAEEVLKQLNSQKITSSIFQTITDAISNIR 1032
WD40-rpts                                                                              

2 WD40-repeats found in QUERY=EG_PFL1935c (Len=1032):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    68-105      3.41  255.47  0.02224       15.0%     44.14
  WD 2:  Seg 21   355-394      3.79  271.05  0.01377       17.5%     54.88

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   68-105    -GRLISSCRLNYDGLICFGWNKNNE-LVLLFKDNIVRVYS
   WD 2  355-394    KYHYKYYDMDCSHPYINMSISKSGTILAFLADNGIIKIYL

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD