Input parameters:

  Query = EG_PFL1750c (Len=1438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1750c, Len=1438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFSGFFKTKFPVDVHLYTIEGYNCKPYLFDCKLSVKKDKIIIWNNITELTFCEDKICDFLYIQLNMCYIRYINNDAIEK 80  
WD40-rpts                                                                                      

Query       81 YIIVFMDISNTYYFYKYMMYCYIKGNLISYKYIDIYKVDCINRTLYKKKLFCIILQNHTKYEHIFVILKDDAEKKLKKYI 160 
WD40-rpts                                                                                      

Query      161 NISLLPKLNDQMNNSNGKGCEVHNADSIIRILKELYIKNEVFLIHIMNCINIQYSELECIYVDSTKFVLKNVFQIVEYNS 240 
WD40-rpts                                                                                      

Query      241 FYSDGFSYRTFFLRDSDDDVWSNDEYTYYDKMKEIPVDTKPNIHNIQGIYYIIHRALERVKTIYCRIPTGYEILRNFYHG 320 
WD40-rpts                                                                                      

Query      321 IHNDIQSSQQNNQYVQKNNIVHQERSSSDHANRNFGQHNMHNSQETHNDFQNILDAYQENIHLLRANLEDDHEICNIDEE 400 
WD40-rpts                                                                                      

Query      401 MQKWEQTNERDQPTQEMNHEINNIEKKIVLINEQMCVIELPTYGVELSVYTIELPVHTIHLPIDSIDMSINGIKIPIHEI 480 
WD40-rpts                                                                                      

Query      481 EIPLHKSEMSICKIEIPFCKTEIPIWKFEIPIRKHEQRIYDIDQHNGVIDHIIREIDDEIINFNKSISDINKNHIKCDQV 560 
WD40-rpts                                                                                      

Query      561 HSHMNQSHHNITPSNCNTDQLNFDSDKSKMGDVQPNDQFNRFHMNNGQSNDKFDKLEIKSSNNNIVPYKNLNHKETFNNI 640 
WD40-rpts                                                                                      

Query      641 MNILYNNIYFTNENTNLCLDYVPLILQAIKLFNERKMENRKTLPQNEHNEHNEGVHVTALSQENNRSEEDGLEKEKDDIC 720 
WD40-rpts                                                                                      

Query      721 ASAHIETNDHVETNDHVETNDHVETNDHVETNDHVETNDHIKGNDNVEKNDHVETNDHIKGNDNVEKNYPFEKCRYSVNN 800 
WD40-rpts                                                                                      

Query      801 NTQGEAQKNLFGFPNLMKNSVSAENKKQDVDVLERYIDDYTETTIKVLRENKKRRKRRSKNSTKYEMNVEEMLKYLTCEI 880 
WD40-rpts                                                                                      

Query      881 YLNVKNFMKEVAKQYRNDDELYCVISNNVLSKYATVCDFVKKKVNKSRVSMHPINKKKKTNKIQRKNTIKKNKMIQKNKY 960 
WD40-rpts                                                                                      

Query      961 NIKNLNKDDNNNNNNNNNNNERGNRNATHNKSRNIKKNLHKYNSENTSYNTSENNNTFSNMYSNCVGNKFYMKFEGGKKY 1040
WD40-rpts                                                                                      

Query     1041 KSRMTNNPAWINEIINLSDSEESDNSEKKDDKKKKKEKQKYRMKYKHLSTSGIYSVVLRQNILPKGYKEKMERNSKELKL 1120
WD40-rpts                                                                                      

Query     1121 WNYINYDKIYNELCIFDFYDFNNRKKLYNVKREAFIYEDEKCIPKEIHINNEEGNQLILLDERYDTNFYMMDVKKEKLVR 1200
WD40-rpts                                                                                      

Query     1201 KWCNENIPITKLLKKMDNIYLGYNESSLFFVDTRLQRCIQNIFQYNKYASPIEHASIDNNGRITSSTSRGELKYYDGTIN 1280
WD40-rpts                             (________________________WD 1_______________________)    

Query     1281 KQNKIKKSKNVIYCSDDMVHLTTSHKGLYSIVTCQKRIIIYDNFMDNKNFFDHVIRKCYRYQQNSIVLKLEPIDEFIHDL 1360
WD40-rpts                                                                                      

Query     1361 GDYTFIKTVSYSNSKYLFTFAKDFCVIWNLFQGINKNVSYTINKVPEDISDISLYDTSDEHDALLLATEYTLTLTRII 1438
WD40-rpts                                                                                    

1 WD40-repeats found in QUERY=EG_PFL1750c (Len=1438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 35  1224-1276     3.16  245.29  0.03038       17.5%     32.80

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1224-1276   NESSLFFVDTRLQRCIQNIFQYNKYASPIEHASIDNNGRITSSTSRGELKYYD

   WD40 Template    TGECLRTLSGHTSGVTSVSF-------------SPDGKRLVSGSEDGTIKVWD