WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PFL1600c [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFL1600c (Len=3193) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFL1600c, Len=3193): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MKEDSPNDPHINKIYAQNKTICSNAPFSNNEDHNINKNEYDQNNYYNKKNNDMLISNISEIKDRRYFSQCVDSNLDKNYV 80
WD40-rpts
Query 81 DIGDTKCNNASVRSYSYKKEISPHHNKNIMFTYKYNLANDERNSQNLREHPINNNNYEHIINEGDYYQNMKCVSRPTLNV 160
WD40-rpts
Query 161 SSLNMKDMNVPMIKNDKYPEGYINQTILNNNNNNNNNNNNNKHIIEKGKCTNGYYSYSQPLSPMVFNNNNSGNIMLDRNT 240
WD40-rpts
Query 241 LNNSHMNMSTFNYYNNYINNNIGNEHKMDNIYIKENKHGNEDILNNDMLSNDILNNEIVSSDIINDNNNNNNNIRDTITD 320
WD40-rpts
Query 321 GMRNYYTLGSNKMRMFNVCRNMTQTYNNGNNNNDDNNNNDNNNNDNNYNYEHNKHNYHNRRDGYGDVLNNNKDDITKEIE 400
WD40-rpts
Query 401 KNISLLCNQPHVDNYDMDNSIGIKENTANRNYINPLIYINEKQQNCFKGNYNENNVEMINVDMIRNNSIYNDKTTNINYE 480
WD40-rpts
Query 481 EEKSNNIKDRNDMNMNNTFIYNTTYEPLLNRNMNIYNITNKDNYDNNQYNNCDNNQYNNHDNNQYNNHDNNYDNNQYNNH 560
WD40-rpts
Query 561 DNNQYYYNPNNQYYNNQYFNNNYSQYHNSREHPMTNDPYNTENRQDGNHLKYSNYLNNTYNDHNYHNYHNNYHNNYHNNN 640
WD40-rpts
Query 641 NICASNNKEIYDQNNDTINQNVPLSKNTNHSNKQTILYDKNTIPNYPYYTYNIIQDKCLKNETENKTRNSTYNSFPINTN 720
WD40-rpts
Query 721 TEQNKSKITRKNTNINLIQTEYDTNYQNNGAYNNYMENSSNNLNEYNQMDNQINMYNQNIIHNYDHSVENGEVQANMNRS 800
WD40-rpts
Query 801 DFVNTAIGGCENYHMLDKKNKMVDINNNLIQYESNTVLDSRNVNVYNNINENNLNKIERGNRNQDEQEEYKDEGEDENNE 880
WD40-rpts
Query 881 VSIGRKVYDNNNNNGSNNNNDGNNNNGSNNNSSSYYYNNYPCYPQNSNINNLDTYKIETGTKIKNDISLHIKKEKEFKNT 960
WD40-rpts
Query 961 KHILNDYGVINKCVEHDNEQLKNQILENEHEQNGKEEETNGVAFLPRDIKKVAYNTNENGYMYNNDNVYKNEELNKNINI 1040
WD40-rpts
Query 1041 GVEKGYIDSSYNNVSINQTVDYKENNNYNGNIKYNYDNSDMIHNGINMNKASILYSQSNRMNINYKMMSVQNQEDISKDE 1120
WD40-rpts
Query 1121 NGNPAYMINNTNSINKNIAVNKDNDNNNNNNYNNNNNNVYREENVSLGCFNNVEENNNINNNINNNNNNNNNNFYYNYNY 1200
WD40-rpts
Query 1201 NYYINDNSYTNEQVPGAKMLNHNSSHIYNNTYDMDNLHVNNINVNNVNTNNRNINNINNINNINNVNMKSLDNNNNINMI 1280
WD40-rpts
Query 1281 NTYNMAFVKHQTNNDNNNNNNNNNNNNDNNNDNNNDNSYNNKSDNMTSILHNVNNVSYDNYNDIPAAINNNYINTNNMLI 1360
WD40-rpts
Query 1361 NNKHMQQNYNCQDISNNSNYISNLKNNNNNNFYNNNNNYMINHDHSMFNKNVQSIHMSSDNIHVTNHFDINQNDIQQNNL 1440
WD40-rpts
Query 1441 VINNNELNENIQMIPQNNIYFASTSSNNNMMPNSNFMCSHSNNNNNNNNNNSNMTCNYTSCSNLMRPPQNNIINNNNNNI 1520
WD40-rpts
Query 1521 NISTNELSSGYQNPNIILSSSSIIDSNMCAVSSNLQHNNYNEDNNYKNECLNNNNNSTHNNINNNDQNYFKQENNCADEK 1600
WD40-rpts
Query 1601 GIHENYQKSVSLNINMKHTKNKKSNNNDGKKRSNKNIKEDKKNDVTDNNENNGKRNKKIRKAKTFGGTVKKGGTIINLEA 1680
WD40-rpts (_________
Query 1681 ESQRIKRTPFCIYSLNDICNHLRYGKKSANSINGMIKTSTCNCEIHNDMKFVKQYINFLIAQKEKERINKEKKINEKEEK 1760
WD40-rpts __________________________________WD 1__________________________________________
Query 1761 NDEGNKKEEESQKEEESQKEEESQKEEESKNEEESKNEENNIKDNEQKRKNKIIKKKCVHGKASEKNTEDIDNTCCNNNI 1840
WD40-rpts _)
Query 1841 DGDHCEDIEFCENDESDKESNNFENILQKYKGIFCNYEYYFDLEVKYNREYFLRQLLLKQAFNDLYNFSQCTNVTYNVRR 1920
WD40-rpts
Query 1921 MWHPLFNRPLGDIGRKLILKEIREHHHRDAEKTTKLLLKNGLDYGKVRFMKVNELYHYMYALGVFEYAVKISLEFGSNIR 2000
WD40-rpts
Query 2001 MSTISSKIDHVNLCSNIKNGYSYCLICCSQKIRIGSIINNTINLMNYKILLNTKKKKEKKKKKNKNKKKNKKKNNNNNNN 2080
WD40-rpts
Query 2081 NNNSDNSTRHFNNEQQIYSMNINHNSFIKKNYFHSSNNNYHLNYYTDSSYCSIVVIDNEHLHDGVYDQNSCNLRLSYCNN 2160
WD40-rpts
Query 2161 TSNNQNINYNNHEHDINNDSDCSTKCGSNKIYLDNSIYNENDVFISNNSKHSNNDGKDKGEEQGKEKSKQSKCNKKDDVL 2240
WD40-rpts
Query 2241 KRYSMYLKDPKENNTKKDNKSKLDEDTQKYPITKIVDNKIFHLKNSYLIDDDRNEISSLSINYQAKKECHIYYPNGGQVE 2320
WD40-rpts
Query 2321 RLKNEMININIDNRNIEHIPNNNINEDKANEKNNNYKNDDDDNNDNNIKKKRSKKNKKTDGDNVDDDDNDDDDESSNDSE 2400
WD40-rpts
Query 2401 YDGNKRKDDHHKDDNDDDNNNNNNNNNNNNNNSYSNKNNNYYYYYQYDYHKNECNRYYQYRENDYNSGNNKTNCNNNNNN 2480
WD40-rpts
Query 2481 NIPYNYQKYYNNNIHSKKHDNNICFNNTNNYPNNINTNIYKGITHDNEKKNVENNKILKYGNTYNETNFINNPTDISTIK 2560
WD40-rpts
Query 2561 KDMILYSPEKKNTDENVIKFIPDEKIIWSILKSDISPSLTQFFFNFIIKKNQYNFFLNKSYIKYDNHMDDIYVHKTDGNT 2640
WD40-rpts
Query 2641 KDGYKNCQNRSYININRNRNNLSNAYNNLDYYTHNKHLDGGNVDINDAIYTDKKKSEEKIFFQNKSWINQKSMEYINNYD 2720
WD40-rpts
Query 2721 NINIIQRDNKNKEKDKTNQNYIHINNVHKISSDNLLRTHTDIIVQHKDMSKKENEIKYYTNNHIDVNITNDKLYYNNKKL 2800
WD40-rpts
Query 2801 KKLFKEIKNNKLCKYILAKIKEIKYNKTYMENIKTNNKKRKRNITYPYFMFYQINNFLINPNPFHNSFFLNEMNYCSIMH 2880
WD40-rpts
Query 2881 NCTMYHKKINKKIKTKNNNNNNNNNNNNNNNNNNIKSHCCSCGGGDVSNILENINKNFQHKHFLSHKHSYNEHKEEDGEE 2960
WD40-rpts
Query 2961 RKKKKKIKKRIKKIFEFAQIFKKMSQKKKENKKEENLHLYNANKTCKDYRTLRHKEELHEQILFINSKKYNDEIIHVNEY 3040
WD40-rpts
Query 3041 MKNEEEINLTSNCLKDNLQNVKNNDDEKTYIDNEGDNISIDYTYKKKKKIWSCFPDFEKSRRLKFIRKKKKEKTKFKKII 3120
WD40-rpts
Query 3121 RYLIQNYKIKNINQANHHKNNFHADVYFKNNDINQKGKNIKNTLRIRNNTKHIFIYLITHTNIVKHKNKTFSI 3193
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PFL1600c (Len=3193): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 44 1671-1762 2.91 234.72 0.04192 12.5% 10.86Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1671-1762 KGGTIINLEAESQRIKRTPFCIYSLNDICNHLRYGKKSANSINGMIKTSTCNCEIHNDMKFVKQYINFLIAQKEKERINKEKKINEKEEKND WD40 Template TGECLRTLSGHTSGVTSVSFS-------------------PDGKRLVSGSEDGTIK---------------------------------VWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |