WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PFL1395c [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFL1395c (Len=3209) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFL1395c, Len=3209): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MYIEKLNLNSENEKITSLDFQAHGDMNRLAISSLHQIKIYHIPLKDKCLRNNKINIELLFVSNDHKLVYINTIRWSFNGL 80
WD40-rpts (____________________WD 1____________________) (______________WD
Query 81 FLASCDSGGTLVCYELDLNKKKIMDEIKKNNENNENNENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNVNMISTYSSIG 160
WD40-rpts 2_____________)
Query 161 NKEEWKMTKCVKIPENGEIFDLSWSRDNEHVVCGISKGVVYIFNLRRSIIVHKLFVNGTTENIKGVCFHPSNNLIIAQSS 240
WD40-rpts (_________________WD 3_________
Query 241 DNITCLWKKINISGDSKNYCGNFYEKNIKTNINEDFIINGMNNMNNNMSHYTYDKKRSIQHNDFVTSTQPLTREYFHYIY 320
WD40-rpts _______)
Query 321 EENMNKKYKNIDTPTIRHIYFDTFGKYASITHIPNNGRNCGILLKIKNNEKINRNRIFLDGHGSCIRLAKIGQKVFIDVQ 400
WD40-rpts
Query 401 KKKLYSLYCQCSDNGVISFWKIFLKRLKRKSSSYMKDINNMNSVNTVNFKNSANTVNFKNSANTMNIKNSANTMNIKNSV 480
WD40-rpts
Query 481 ICLNEDKKNFNKYSVEKKKSILKRKKKMNKYARCFLIIQNLLEEQTCAVDLSWSEKYDQLVIGASNGSVYIIQLDVFKLR 560
WD40-rpts
Query 561 LKPFYYNIKIDISNIGPDYDMIEKEIEFKVVKPKQIKDNYQHVDKKVKNRITPKIKYLYDEYGNIIEHNNSNNNNNNNNN 640
WD40-rpts
Query 641 NNNNNKYNIKHNNNNNNKTPDVIHILNCSVYSFCKQLTATDSLSKLLDERKQYSYKSNYKNRCNFYDNPWCHIKFSSIVN 720
WD40-rpts
Query 721 ILLYIFMKVIKRFIKSFVILIYSDVYTVFHKTLPILTSTDIISQGNSNNVCRVHKYEVSHKYEVSHKYEVSHKDEVSHKY 800
WD40-rpts
Query 801 EVSHKDEVSHKYEVSHKYEVSHKYEVSHKYEASHKDEASHKDEASHKDEVSHKYEASHKDEASRNDSPNDSRDSHNRNND 880
WD40-rpts
Query 881 NNDNNNNNNKNNNNNNNNNNNNNNNNNNNNNKNNSNTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDDDKKKK 960
WD40-rpts
Query 961 KKNAIFKGEKRNSLSNDNSLDDDPNTEKKTKSVKSKKISKPIISNVTNIINSNMNKSTINSNNFSSNNNNDNNNNNNNNN 1040
WD40-rpts
Query 1041 NNCSNSKIFKDAKTNKNSKKKTETNNELYTLKNRNDMSNDEMLTGDSIKNVVQASIENKKIPSNNNTPGNNNNLGNNNNL 1120
WD40-rpts
Query 1121 GNTNNLGNINNLGNTNNLGNNNNLSNNNNLGNNNNLGNNNNLGNNNNMNNLNNDLKDDDYYFESFTNYLREYDTLDSTNN 1200
WD40-rpts
Query 1201 QVNLRILDIIRNNYNKENNKDMYESTIPIVTQPFCNYDDINKKNNHGFALFNIEKTFNVTKVVDLSKDKGGEKKKVNKKT 1280
WD40-rpts
Query 1281 DSSEKRDKPKDTNYKKRDSKSKDSVDKKKGESKQKDNNEKKRDSKGSPTNDKKRDNKTNGIHDKRKDTKRDMKNVNKEMD 1360
WD40-rpts
Query 1361 IEQNKEMDIEQNKEMDIEQNKEMDIEQNKEMDNERNKEMDNEQNKDMDNERNKEMDNEQNKDMDNERNKEMDNEQINEEI 1440
WD40-rpts
Query 1441 KSPSKNKCTFENINDPNDLTKTLNKTSIIDSNSSVRKDKNKSININSNTYCNVECGMESNVYSNAESVVHSNIESITYSN 1520
WD40-rpts
Query 1521 AESNVQSDVDKGTSTKNEKKEEKNKKKITTTTTKKKNNNDDNSDMEWENFNPQFTIFNTFEPNEDMFLSKEKHDTSNDGE 1600
WD40-rpts
Query 1601 KTGSNNMQKKQSKRKSLDNTNDNKKHNNKNNINNNKKKNDAFFLSNEIHNNKNKNKNMNHTSILQSNDENNDMLNKNDHI 1680
WD40-rpts
Query 1681 DLLHMESQTYDNMRSSDKKYGDKNVYMKKKETDEFEQEEEHVGDKNYRGSKYNRANEKYGDDKKLKNDEQHVDAHYMPYE 1760
WD40-rpts
Query 1761 HNVENNKMKNQKKRMFSNEENMNRFVKQEDGYSKKWKHDSVNTYSYDKGEHYDINYSRKEVLGNQCIENNDDFMENFKES 1840
WD40-rpts
Query 1841 RNVYNIEPNKNDDTYERRSMVRQRYMENEKAQVHDIYKKYYEQEENNEEEHDLNQYDHPYNMKKRKYVSNFYKNDEVMLH 1920
WD40-rpts
Query 1921 DNIIQQDNMYNDTLQNNKNYIMQSRSNYNVEMFNKNNRLEDCEEMRDIKKHKKNDMKKNKNNKNNKNNNNNNNKEKDDNY 2000
WD40-rpts
Query 2001 NIKNTNEKMIKNEKDNCNNIENVHYKKIMDKIFILDNRYENCRICCLHENALIKKKKKEKGKISQNNHIYNEYNILWQDE 2080
WD40-rpts
Query 2081 LLGRMINYIFDNYYIYIITNNNTCHTSLLSIYNLESKLLLDNFVIPLENVCGINIIKTFYLDNSNMYIFFYIYNINGLYY 2160
WD40-rpts
Query 2161 IYQFYNYSIITLLYSFSISELNTSVECINMSIIEKLENNISIGKKQKLYLRNYKNQFLVPKKTQIKTKLENDKIGSNIKK 2240
WD40-rpts
Query 2241 NNHISFIDDKKKKKKKKNDVIKNKPNIKEIKKLIKYITFYNNQNENHILLNNMNANSFNDYNNLGLNQITLLNKKKKKKN 2320
WD40-rpts
Query 2321 TNGNNNNSNNNKCSRRKRYNIKKDINKKNIFNDNNYSPSNSLLKTKMKKKIYNKKYTQLKSHSPLFGTKNYINITNSLRP 2400
WD40-rpts
Query 2401 SCCNDKNQFHILRRMPISKSGDDVNLINNEKRNKKMKTKNVALGKKSYINEFFNKNIHGYDLIYDFIYRKKSFFYSYMCI 2480
WD40-rpts
Query 2481 YIFLKNGHIYLIRRNLMTKDKDERFIEFNEHISQNNGITLISRLDNIYYDKSLYCDIDLRHGKDDTEEDYLGNNICGNNI 2560
WD40-rpts
Query 2561 CGNNICGNNICGNNICGDNTCDDNIYQQYHSDIEEHTYSYDDPHDDKHNERRRTLRWRGYKDAKLNSPFVDDLFYEKQKL 2640
WD40-rpts
Query 2641 NKECNQLIFSRHLDKQHYLYRQNIHLFDNLQEIQKRGMRNVFTYGNFFNIYNFDLKKLLLSERKIKKTKNKKEDYFQDYL 2720
WD40-rpts
Query 2721 QDYLQREHTDELNKDNKNSLELLEGNEHNMNYKINKENVDSVQIIDDTEHFNNVEEKEKEKNKGSYFMKNYNVSKKLNNE 2800
WD40-rpts
Query 2801 TLKEDDNIYNIHLEDHNKIEDIYNQISYNEYEPNNLKPSRIRPKLIRTNSLPATLSSSFLTGTQSNSLINQNDHKDFFSS 2880
WD40-rpts
Query 2881 SYSSSNDITSDILTAPSCNLESDEESDEESEEFHDITSSNFLSDTSVDMSQDISPDMPHPIPPRVCKNSTLGIQVKKEKN 2960
WD40-rpts
Query 2961 KSEERDGRKGKRKGKKKESLSNNKKNNNSKEQIKKKGYNNKMKNKSLKDKPYVDDDNVPRPFTVFNKFVYKNFPDIYNCL 3040
WD40-rpts
Query 3041 QTWNKQDTDIKTNKLSKENVYVKTIKYLELQMKYSIYIMNKKAFLNYLYIYFKFLVEYLDISRIHQTFLYFIHTTLNHCQ 3120
WD40-rpts
Query 3121 KYFSNFDIYFQNIQSPYWSDTNSLLTMNVHFFFIVLFAYYNFLVPLYILLCRKETKKIYYSFLKFIKEMQNAIFYIQKIF 3200
WD40-rpts
Query 3201 HNHFHELCL 3209
WD40-rpts
 3 WD40-repeats found in QUERY=EG_PFL1395c (Len=3209): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-46 3.34 252.68 0.02422 17.5% 5.64 WD 2: Seg 4 63-95 2.87 233.08 0.04407 17.5% 41.30 WD 3: Seg 11 210-248 4.57 303.41 0.00506 20.0% 43.36Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-46 MYIEKLNLNSENEKITSLDFQAHGDMNRLAISSLHQIKIYHIPLKD WD 2 63-95 NDHKLVY-------INTIRWSFNGLFL------ASCDSGGTLVCYE WD 3 210-248 -IVHKLFVNGTTENIKGVCFHPSNNLI------IAQSSDNITCLWK WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRL------VSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |