Accession: EG_PFL1125w - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFL1125w (Len=1618)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1125w, Len=1618):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVDDEELRKLRFLLSNKGGRIKYFFSYIFYKLFSHIYNKKNKKRERFVNIHGRTFPNFFCDNKIKSTKYTILTFIPLFLF 80  
WD40-rpts                                                                                      

Query       81 YQFADFLNLFYLCVSLLQIIPIFNTGYVFTFVAPLLFIIFISLINEVVDDLKRFIKDLENNNEIYYSLLENGNFQKIYSK 160 
WD40-rpts                                                                                      

Query      161 DIRVGDIILIKSKQRVPADCILLRNLNKNEESNFKVEEKRLFNCFRWNKSNNVYNKINKSYYHFNKNIDNELIDDRYNES 240 
WD40-rpts                                                                                      

Query      241 NNNCSETSNNLLFSENEKSQKKGKKKQKKKLMLGDNNTNMNDFNFNPNDQNNNMSNQLKKKKKRKKKNNKSKKNININET 320 
WD40-rpts                                                                                      

Query      321 TNETANYTYVKTDKIDGETDWKIKYPINIFQNLKRLKDFFTIDILFILEQPKNDIYKIEGSFVIFKYNPYGDFKTTENNN 400 
WD40-rpts                                                                                      

Query      401 HSLNDNQLLNYSFDMAKEDEGRVQDDEDVDEDDYDDDDDEDDDDDDEDDDEDDDEEDDDEEDEEVNIPNNEKNDTQNLDD 480 
WD40-rpts                                                                                      

Query      481 KKSVRRIFGTKNNTYSYGDDDQVQNEKKKNLDRGYLNLEEKDTDYAYNKKDKKKEMVTFIDVEKGNNERTINLNKKKNSV 560 
WD40-rpts                                                                                      

Query      561 NTTGNRSSYVNDGKMCNVFNNEDNFNFYNVNYRKKLNYDNFILFNSVITSSDVICLVIYTGSDTRVNMSTQISKIKRGMI 640 
WD40-rpts                                                                                      

Query      641 DEKLNLITLFLFIILTLFSIYMCSVKLNNLWYLNFIRFMLLFSSVIPISLSVNLNIAKIYYTLLIQRDKEVESTIIKNSG 720 
WD40-rpts                                                                                      

Query      721 IIENFGDIDYIFTDKTGTLTENVMVLKVIHIGFDVIHAENEKNSIQGNNMETKQKGNYNKKMLSYNLDDMNEDVDDTSIY 800 
WD40-rpts                                                                                      

Query      801 LASSNYSKHDRRNKNLRNGELASFSYEMENTSNINNNTKLRNYTKSNHHHNNISDNELYDEKNYNDDQRSLSNYSDTSYG 880 
WD40-rpts                                                                                      

Query      881 DVHLKNYKQNNMILNQNMGQNRNETLTKNNNNNNNNNNNNNNNNNNMSLEKKKKKVEKMVDEFLKYKSDPLDYYNDNIDD 960 
WD40-rpts                                                                                      

Query      961 IEYLKRHRVFQTFLSFLICNNIRTLTKESSNKEKEKTKKKKERKEKDFQKNLYYILKVNRKKKDVQKNKKENNSDNVKSS 1040
WD40-rpts                                                                                      

Query     1041 TQNKKKKHFSSNSSEDSETFSHSDVSYQCSSPDELAFLKYATNCGFILKKKTASKIEIKYKNIMLEYDILLHIPFSSETK 1120
WD40-rpts                                                                                      

Query     1121 RMSIFVRNVKNRNIYFFIKGADNVLIKKCHEKYKTFIYEESDHLSNIGLRVLVHGCLNVEEQFFHNFSALYNKNKDVKGQ 1200
WD40-rpts                                                                                      

Query     1201 LENILEYVEKNIKVLAITGVEDKLQEGVGKTIEMLYNSGIKVWVLTGDKIETAICICKNANIKKKKHNIYIFRHENIKST 1280
WD40-rpts                                                                                      

Query     1281 SNLIREFNSILHNIESYVLFFDNIIIQNCIKYIPNAFVDFAANARAVVCCRCSPIEKKEIAILIKTIKKKKILCIGDGGN 1360
WD40-rpts                 (_______________________________________WD 1_________________________

Query     1361 DVAMIQSADIGIGVLGKEGKQVVHDSDIIVSKFKNIKKLILYYGNNTFLQTSSLCSFLIHRGFILTYLQFIYSYIFFSIP 1440
WD40-rpts      _____________)                                                                  

Query     1441 VSIFQGWLQIGYTTYYTTAPFLSLLLDIKIKKNLIYLYPEIYKNKKHKRKLDLKSFFIIVWISIFQGTVVMLGALKLFND 1520
WD40-rpts                                                                                      

Query     1521 NYNNLINISFSSLIVLEIMNIHLEVESWHPLMISANICSFIVYIFSMFILRNYFDIMQIMSVMFWYKVILIVIFAWLPFF 1600
WD40-rpts                                                                                      

Query     1601 IIKKVKNIITPSQFFKLA 1618
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFL1125w (Len=1618):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 38  1292-1374     2.91  235.00  0.04158       17.5%     16.65

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1292-1374   HNIESYVLFFDNIIIQNCIKYIPNAFVDFAANARAVVCCRCSPIEKKEIAILIKTIKKKKILCIGDGGNDVAMIQSADIGIGV

   WD40 Template    TGECLRTLSGHT---------------------SGVTSVSFSP----------------DGKRLVSGSED------GTIKVWD