Input parameters:

  Query = EG_PFL1040w (Len=458)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1040w, Len=458):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYSKRFSKNTYYLPYKSKCLSNVNGSLLKEPYNLHYFLLGTNNPSCENEIHLIEYNDQFLSVRNIETYHYEGESEHLICL 80  
WD40-rpts                                                                                      

Query       81 DMYENEDQKKKIILCTAGYEKCNEQKMINNDMNYNECNEYDYRNDVCSLWMGDIDNLDDNNNDDNNNNNNDDNNNNNYDD 160 
WD40-rpts                                                                                      

Query      161 TNNNNDNDNNNNNNDNNNNNNNHNHNNHNNHNNHNNNIDKQTNYKNQKNHSKKKKKKLTKVLELNKGNNENFKYIKKTVV 240 
WD40-rpts                                                                     (________________

Query      241 NDFNKEYNKICIIDKNSYSIFNRTKNDVNFMVSKNVNYELVDGIFDPHHENILTVMSNIKIYGYDIRSNMNIFSTYTNHK 320 
WD40-rpts      _WD 1________________)(___________________WD 2__________________)    (__________

Query      321 ADLSSIDFNSNIPNVLLTSSNDGYIKLWDLRFLKDSFFTTNIHSHWITSIHFNHFHDELLLSTSTDHLLKLHKISFPTSN 400 
WD40-rpts      _______WD 3_________________)    (_________________WD 4_________________)(______

Query      401 FQNDNVNYELVKTYTDHEDSVYKGCWSKTDAWVFSSLSYDGKCVVHGVPTDQKYKILL 458 
WD40-rpts      __________________WD 5________________________)           

5 WD40-repeats found in QUERY=EG_PFL1040w (Len=458):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   224-262      3.20  247.01  0.02882        2.5%     41.66
  WD 2:  Seg 13   263-305      5.08  324.53  0.00263       10.0%     49.82
  WD 3:  Seg 16   310-349      6.13  368.02  0.00068       30.0%     48.74
  WD 4:  Seg 20   354-393      6.37  377.90  0.00050       25.0%     50.62
  WD 5:  Seg 24   394-447      5.32  334.31  0.00194       27.5%     49.79

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  224-262    LN-------------K-----GNNENFKYIKKTVVNDF-NKEYN-KICIIDKNSYSIFN
   WD 2  263-305    RT-------------KNDVNFMVSKNVNYELVDGIFDP-HHE-N-ILTVMSNIKIYGYD
   WD 3  310-349    -M-------------N---IFSTYTNHKADLSSIDFNS-NIP-NVLLTSSNDGYIKLWD
   WD 4  354-393    -K-------------D---SFFTTNIHSHWITSIHFNHFHDE-L-LLSTSTDHLLKLHK
   WD 5  394-447    ISFPTSNFQNDNVNYE---LVKTYTDHEDSVYKGCWSKTDAW-V-FSSLSYDGKCVVHG

   WD40 Template    TG-------------E---CLRTLSGHTSGVTSVSFSP-DGK-R-LVSGSEDGTIKVWD