Input parameters:

  Query = EG_PFL0970w (Len=618)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL0970w, Len=618):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLLKGYNDYNESDIEREDESKEISSNKNDDTEYIENEEKNDKDQNNYDLINIRPINTLNCAPDINTYDLEIKCYKEKFQ 80  
WD40-rpts                                                                                      

Query       81 NIEKKIMFDNPEFHNILNRPQQGPSINEHYNFLKNENKNHYNGSIETTFVNKNIFDYQYNQFNVTGIAENPALKNYYKNN 160 
WD40-rpts                                                                                      

Query      161 YANYLVAKNINERKNMHEDLNFKKHKKKRSKNNDDNMLDKYKGPWEEKETNKKEQNEEKQDLLNDNKKVKTDNDDNNDKK 240 
WD40-rpts                                                                                      

Query      241 INKYILTKLEACAYEEAIKNNVIKEKNTLYNDKIISTLHLNEELDDDDNNMGFYNKSWFQLPAEYKERDFMIEENFPPKK 320 
WD40-rpts                                                                                    (_

Query      321 EIHTYKGHKMGVQKIRFFPKYGNYLLSASLDNTLKLWSVYKSKSCIRTYKGHFKGVKDVLFDNDGSSFLSCSYDNNVIYW 400 
WD40-rpts      ________________WD 1_________________)    (_________________WD 2________________

Query      401 DTEYGKIKGIYNQKKTPYCLCLNPDDTNTFLVGGANNKICHIDFRTGNIELEYNEHLQAINTITLCENNKKLISTSDDKK 480 
WD40-rpts      )(__________________WD 3__________________)   (_________________WD 4____________

Query      481 IFIWEYGLPVVVKYISDASMFSITSVSVHPSNNFFLCQSMNNVITVYEATGKFRLFSKKTFKGHHNIGYSINVSCSNDGK 560 
WD40-rpts      ____)(___________________WD 5__________________)(_____________________WD 6______

Query      561 YVISGDSNGGLFIWNWKKMVNFKNIKAHKNVCIDCVWHPFKTSMLATASWDGTIKLWE 618 
WD40-rpts      ______________)   (_________________WD 7_________________)

7 WD40-repeats found in QUERY=EG_PFL0970w (Len=618):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   319-358      8.49  465.27  3.3e-05       37.5%     52.69
  WD 2:  Seg  8   363-401      9.72  516.06  6.9e-06       40.0%     53.37
  WD 3:  Seg 12   402-443      5.60  346.06  0.00135       15.0%     54.07
  WD 4:  Seg 16   447-485      8.86  480.59  2.1e-05       22.5%     56.45
  WD 5:  Seg 20   486-528      6.53  384.59  0.00041       22.5%     54.03
  WD 6:  Seg 24   529-575      7.11  408.19  0.00020       32.5%     47.04
  WD 7:  Seg 28   579-618      7.04  405.42  0.00021       25.0%     51.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  319-358    -K---K-----EIHTYKGHKMG--VQKIRFFP-KYG-NYLLSASLDNTLKLWS
   WD 2  363-401    -K---S-----CIRTYKGHFKG--VKDVLFDN-D-G-SSFLSCSYDNNVIYWD
   WD 3  402-443    TE---Y----GKIKGIYNQKKT--PYCLCLNP-D-DTNTFLVGGANNKICHID
   WD 4  447-485    -G---N-----IELEYNEHLQA--INTITLCE-N-N-KKLISTSDDKKIFIWE
   WD 5  486-528    YGLPVV-----VKYISDASMFS--ITSVSVHP-S-N-NFFLCQSMNNVITVYE
   WD 6  529-575    AT---GKFRLFSKKTFKGHHNIGYSINVSCSN-D-G-KYVISGDSNGGLFIWN
   WD 7  579-618    -M---V-----NFKNIKAHKNV--CIDCVWHPFK-T-SMLATASWDGTIKLWE

   WD40 Template    TG---E-----CLRTLSGHTSG--VTSVSFSP-D-G-KRLVSGSEDGTIKVWD