Input parameters:

  Query = EG_PFI1445w (Len=1378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI1445w, Len=1378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIKVTIFLLLSIFSFNLYGLELNEKVSIKYGAEQGVGSADSNTKLCSDILKYLYMDEYLSEGDKATFEKKCHNVIGNIRN 80  
WD40-rpts                                                                                      

Query       81 TFSNKNTIKEGNEFLMSILHMKSLYGNNNNNNAGSESDVTLKSLYLSLKGSQNTEGESEVPSDDEINKTIMNFVKFNKYL 160 
WD40-rpts                                                                                      

Query      161 LDNSNDIKKVHDFLVLTSQSNENLLPNKEKLFEQIVDQIKYFDEYFFASGGKIKVKKGYLKYNFLDIYKQPVCSAYLHLC 240 
WD40-rpts                                                                                      

Query      241 SRYYESVSIYIRLKKVFNGIPAFLDKNCRKVKGEEFKKLMDMELKHNHIVERFDKYIISDDLYYVNMKVFDLKNVDKIQV 320 
WD40-rpts                                                                                      

Query      321 SKIDDINNLNIYEHKETMHLSAKNLSRYIDIKKELNDEKAYKQLMSAIRKYVTTLTKADSDITYFVKQLDDEEIERFLID 400 
WD40-rpts                                                                                      

Query      401 LNFFLYNGFLRITEDKHLINADDVSPSYINLYRSNNIVALYILKTQYEENKLSEYRAHKFYRRKRVSNITNDMIKKDFTQ 480 
WD40-rpts            (____________________________WD 1____________________________)            

Query      481 TNALTNLPNLDNKKTTEYYLKEYENFVENFQPDLHDIMKLQLFFTMAFKDCNVNQNFTETSKKLWFDLLYAYDKFGWFYI 560 
WD40-rpts                                                                              (_______

Query      561 HPNEVINSINKTDFVRHVLVSRNFLLKNNDQLTFLETQVAKIVEIINLSLEVDKSPDSLDFSIPMNFFNHKNGYHVMNDD 640 
WD40-rpts      ________________________WD 2_______________________________)                    

Query      641 KLKLLTSYEYIDSIANNYFFLSEYKNDVFRTGNNFKLYFNLPNIYSLAYQLFNELAININVITNVPLKKYLKYNASYAYF 720 
WD40-rpts                                                                                      

Query      721 TLMNMIGKNHDIYSKGSRFVYASYILGLVFFIESHIDIARLKPKDFFFMKQSLPIIDHVYHKDLKTLKKNCTLLTDFMKI 800 
WD40-rpts                                                                                      

Query      801 NKNSQNYSLTHTEEMIKILGLLTVTLWAKEGKKSVYYDDDVSLYRKLMVSCVFNGGETIQEKLANNIEKSCDISQYGIKS 880 
WD40-rpts                                                                                      

Query      881 KNLKDMIDINLSIHKWNPAEIEKLAYSFVLSCKMQKLMYKPMNVEKLPLEDYYKLSLAPDMVKTYHCYKLGKQAAELLES 960 
WD40-rpts                                                                                      

Query      961 IILKKKFVRFRVTDAIDVYDFFYIKKVLSSRIKKEYNEFLQDKRAFEKKELETILNNSPFSEEQTMKLINSYECHWFTSY 1040
WD40-rpts         (_________________________________________________________WD 3_______________

Query     1041 ENFRILWMHASSNLGTGTYLKNFFSELWQNIRFLFKSKLKIRDMEYFSGDISQMNLLDYYSPMVHSESHCQEKMQVLFIT 1120
WD40-rpts      __________________________________________)                                     

Query     1121 LRDSKEENRSEIAQKVKSAYYQCKLDYYKNHHSDFIHRIHPNDFLNNKVYVLKQPYYLMSNVPLNNPKKVSRLFVTEGTL 1200
WD40-rpts                                                                                      

Query     1201 EYLLLDKINIPECFGPCTKLHFNKVVIKESKQRIYDMTINNALVPEIQPYNRRKYMTIYINEAYIKNIVSDALTSEEIKR 1280
WD40-rpts                                                                                      

Query     1281 HDIQKGNIKICMGKSTYLTEPILTEEHFNLTHKPVYDFSSVKHNLKVFHMKNEHLVSEDPNDDCFINYPLATINLDISDP 1360
WD40-rpts                                                                                      

Query     1361 YKEISEDLIKNLYILKSS 1378
WD40-rpts                        

3 WD40-repeats found in QUERY=EG_PFI1445w (Len=1378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   407-468      2.96  237.06  0.03905       17.5%      6.37
  WD 2:  Seg 11   553-620      2.86  232.77  0.04449       20.0%     27.36
  WD 3:  Seg 25   964-1083     3.05  240.73  0.03491       27.5%     17.42

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  407-468    NGFLRITEDKH--------LINAD---------DVS-------------------------PSYINLY-----R-------------SNN---------------IVALYILKTQYE-----------ENKLS------------EYRAHKFYRRKRVSN
   WD 2  553-620    DKFGWFYIHPNEVINSINKTDFVR---------HVL-------------------------VSR---NFLLKNN-------------DQLTFLETQVAKIVEIINL---------SL-----------EVDKS----------------------PDSLD
   WD 3  964-1083   KKKFVRFRVTD--------AIDVYDFFYIKKVLSSRIKKEYNEFLQDKRAFEKKELETILNNSP---F-----SEEQTMKLINSYECHWF---------------T---------SYENFRILWMHASSNLGTGTYLKNFFSELWQNIRFLFKSKLKIRD

   WD40 Template    TGECLRTLSGH--------TSGVT---------SVS-------------------------FSP---D-----G-------------KRL---------------V---------SG-----------SEDGT----------------------IKVWD