Input parameters:

  Query = EG_PFI1020c (Len=510)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI1020c, Len=510):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGWKADEVFGGVMSYTYDDIICMPGYIDFALSDIDLTNNMTDNITLKTPVISSPMDTVTGHKMSIALALSGGLGVIHN 80  
WD40-rpts                                                                                      

Query       81 NMSIEKQIEEVKKVKRFENGFIFDPYTFSPEHTVADVLETKNRVGYKSYPITVDGKVGSKLVGIITGVDYLYLTNKSMKI 160 
WD40-rpts                                                                                      

Query      161 GDIMTTDVVTGSYPINLSDANKVLCDEKKSVLPIVNKNNELIALVCRNDMHKNRIFPHASKSQNKQLIVGASISTREHDL 240 
WD40-rpts                                                                                      

Query      241 ERANQLIKNMIDVICIDSSQGNSIYQIDTIKKIKSAHPDIPIIGGNVVTSQQAKNLIDAGADVLRIGMGSGSICTTQDVC 320 
WD40-rpts                                                                (_____________________

Query      321 AVGRAQGTAVYHVSKYAHTRNIKTIADGGIKNSGNIVKALSLGADFVMLGNLLAATEESCSEYYFENNVRLKIYRGMGSM 400 
WD40-rpts      ___________WD 1________________________________)                                

Query      401 EAMYNKGFNSKSRYLVDERKNEYTDENIDEIKVSQGVSASLVDKGSVLNLIPHLFKAVKHGFQSMGIRNIPELHSKLYSG 480 
WD40-rpts                                                                                      

Query      481 DIRFDVRSFNTIKEGKVSDNLIFNNKKFTT 510 
WD40-rpts                                    

1 WD40-repeats found in QUERY=EG_PFI1020c (Len=510):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   299-368      2.88  233.67  0.04328       32.5%     13.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  299-368    AGADVLRIGMGSGSICTTQDVCAVGRAQGTAVYHVSKYAHTRNIKTIADGGIKNSGNIVKALSLGADFVM

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSPDGK---------------RLVSGSEDGTIKV-----------WD---