Input parameters:

  Query = EG_PFI0900w (Len=1720)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0900w, Len=1720):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCIYFFLFLFIITSCNNNNIKYYKINDKKNEKRNNTSYNYNNYNNNNNNSSLNTSVSIYMDKDYEYLVHTSEKNNRLICV 80  
WD40-rpts                                                                                      

Query       81 KKEYNDLIYYTHDNDCDPQNTFSFSFNSTFKFDDHFYMTYKKNKESFIEMNITPSLAIGSCINCLFLDEMNLLSIYGYTF 160 
WD40-rpts                                                                                      

Query      161 IYNKSNEYEYKNYYKKIIDLYHNNSEEYSNDSDVVWNIPVVINMIKADVDKKKKKKYNKNKGHLDSYNYNKDHKDMDKYN 240 
WD40-rpts                                                                                      

Query      241 KRIYRNSLGLAATTFGDVRNGLSKDKWSDRNKIISKVESEPNNSYTNYDDIHLYYNNCQGNNNFQGHHKCGGNISYHQED 320 
WD40-rpts                                                                                      

Query      321 NSKENLPFYYYENSILKKFLKENRIHYAYDEIGKDKIANPNMSGNSDIYNNSPIKMVDRFFMNLKVMEENKEDERKEHKN 400 
WD40-rpts                                                                                      

Query      401 DNNDNNDNNNDNNNDNNNNHNNSHNKGNEKRIFENLKNIIYKENECKIFKDDFNNNPKVWTNILFTNSFTNVNILSHIDK 480 
WD40-rpts                                                                                      

Query      481 YNGTYADLKYFSFHDTYKKKKLNDFLNITFDINNKEYLRNNNVYIIIANDEIKYMNHLIFCSDIISIADPLITYIYNYNL 560 
WD40-rpts                                                                                      

Query      561 RKSYEQIKNKYISDFQDNKVFLIKVFYYEQQILFFLIDYIVGMDDPMKLSIPFFYLVSQNYFTLYTHFFMKDNLIGWIRE 640 
WD40-rpts                                                                                      

Query      641 SKILYVKTMNKIFSYIKESTYYTKKSYDAISIENKIISNIYLLYLTKNIFKYIIFARYNPLKNYSLHKNINFDSVLLNML 720 
WD40-rpts                                                                                      

Query      721 STFTNEELYDYTTYFKKITKKDMNKIKDQKKIERMDIFDIFIIPSTNYIKFESILSKLFKALFDCGGKHISKLLKIAILR 800 
WD40-rpts                                                                                      

Query      801 SHYDMLYNFNCYNYQLYSFLTNLLDLHEYFYEYADLSDLFKESQIILKELIKLTLQEMNNLIPFNEDKYLIKYLIIILYF 880 
WD40-rpts                                                                                      

Query      881 GNDMFCLDKENSVYIQLIHELRHLNIFHAIILAYLSGDKVGTLCTRIDMEKEDKSIIYIKKNNVHTDKFITSYKYDNINY 960 
WD40-rpts                                                                                      

Query      961 ITYDDDNYYIQYKCTGNCNKNDYALSFIKKFDNKYYGDLHVTIRQSSEYTLGIILISFMASVVFIVGELHKDMKRIYVYR 1040
WD40-rpts                                                                                      

Query     1041 IFKNIFIKNYNHNITKYYTFWNSKLYAFEQYEPECILLFNKYNLYEKYNLHKSSILNSFKGSNLNHLKEYKINLLDTNYE 1120
WD40-rpts                                                                                      

Query     1121 KSNINNNEELIKYFDLKKETCLCNRNMINKSKGDFVVSQYLQIRYNFMNKIKKRNKDLYEKMLNYNFFNDPLDISYKTKK 1200
WD40-rpts                                                                                      

Query     1201 FQYEKLIDICKDMKFDKNRLCLFHKSRIILTYLYLLSPYPQFIFYVISPLVFIKPQKYCDEYDIPLVLNNMLKNRNFYKK 1280
WD40-rpts                                                                                      

Query     1281 NAQICINYAFAHFISSGDKTTNLVITAKISGTMVNISKHNLLLLLPLSKRVDILDYSKNNEYDIKEEILNEYFILGNPYT 1360
WD40-rpts                                          (______________________WD 1_________________

Query     1361 PINIIAYSFQDYDNIKKNSHITISGAFIKRYDEKYVTYNTITKIYDEKTHCTNNHSFEHKGILLCFCDILSKQKNANCLY 1440
WD40-rpts      _____)                                                                          

Query     1441 PFCEKTKKFCYLNEECINGECVCIKGYSRNPMSSICEQNNECVLDPNNTCESPGKCVLAKNRYICLCPYPYVRILNNCLH 1520
WD40-rpts                                                                                (_____

Query     1521 PLKGIKIGLYIFNNFHNHFSNDEDDASKKERFYSNVFGSMSDYIKEAINDITKHDLKLRVHVKPIKKLKNAIKATVIINQ 1600
WD40-rpts      __________________________WD 2_______________________________)                  

Query     1601 RNNPNEPTPIEVFNIFLNQLSDSTSALNNGFFSYFARFTYIDYVESFSRNEHIIPFYQNYIKYIPIFLLKIFQGDSFNDI 1680
WD40-rpts                                                                                      

Query     1681 SFIAFVNFIILIGFTFLLLSYFVYLFVKLKFFQVQRVKAF 1720
WD40-rpts                                              

2 WD40-repeats found in QUERY=EG_PFI0900w (Len=1720):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 46  1317-1366     2.94  236.26  0.04000       15.0%     29.69
  WD 2:  Seg 57  1515-1582     2.96  236.85  0.03929       32.5%     12.15

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1317-1366   SKHNLLLLLPLSKRVDILD-----YSKNNEY---------DIKEEILNEYFILGN--------------PYTPINIIA
   WD 2 1515-1582   LNNCLHPLKGIKIGLYIFNNFHNHFSNDEDDASKKERFYSN----------VFGSMSDYIKEAINDITKHDLKLRVHV

   WD40 Template    TGECLRTLSGHTSGVTSVS-----FSPDGKR---------L----------VSGS--------------EDGTIKVWD