Input parameters:

  Query = EG_PFI0395w (Len=1516)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0395w, Len=1516):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNPKENTIVCRRLHRVNMIYATVSNNYNYICIITFCDNIYNVELFSTHNSMHKLFRKCINDELNKVYISNNNSYICVTT 80  
WD40-rpts                                          (________________________WD 1_______________

Query       81 KTGSMYILNIKGKIIHKKESLHALYICKKNNKTLHGKITQNGIKRKRNQQGEYHNEDQHEYPHVSKIRKEEYNSDLLNKI 160 
WD40-rpts      ________)                                                                       

Query      161 KEHKNDNTPIVNSPDEVINLERYQELIDERQEKKNKNKNNYNNDNNIRTYQNHSKNKEHEYTIHNLYPIKNEKNKKKSNL 240 
WD40-rpts                                                                                      

Query      241 QWNETKIMNSNSLFCSELSSVKNYLYDNSIMSISRAENDMCTNNTSTNNICTNDLCTNNLCTNNIDNDINLSTDEHKDRG 320 
WD40-rpts                                                                                      

Query      321 TYAYHKKCDTYNNRYNGEDNEMSYAKCIHSCDNNNLKEKDIQKKEYEKQGLEIFDIYWITIEKDNKYEFIEKSDYIQNYN 400 
WD40-rpts                                                                                      

Query      401 FHNSIHIIYSLDIGFYILCSINLKIIIYKYNILENFYKNINVYNKIRNNISKYFEQELLYKRSKETNEKYLKFLKIYTRK 480 
WD40-rpts                                                                                      

Query      481 SFCIDKNYNMNISYNRYMKRTQKSKKKKSINVKSNITSVISNNNNNNNNKKFMSALFNNHDIRKYFSLSFNDNQEKNNLF 560 
WD40-rpts                                                                                      

Query      561 SNDYNDDKKKLSSYKNNNMLNVKNHIVQQIFNDSFFDIKQSYISHDQNYILINYYLNIKKKYVKLSNLSIYNGNNIYPQV 640 
WD40-rpts                                                                                      

Query      641 NKTKIKTNNNNDEDNNNDEDNNNDEDNNNDDDNNNNDDHNNNYDNNSNNNLHYKSYVDIQKICKNRDRKKYHHAYMIPSH 720 
WD40-rpts                                                                                      

Query      721 KYKSCLVGIQKIQRINNKECKYIEMLVIYILYSYEILRTILHIYERMSNLYSSFDGYQKLYDIYKNILLLPDAIKKYYYK 800 
WD40-rpts                                                                                      

Query      801 DRCIIHFSKYIKNRKENFDENLYNLFFKENEKKDFDKYYKIINNMINQNTVCCACAKYNYFNQQKYKQTQQSINYHQDIQ 880 
WD40-rpts                                                                                      

Query      881 KKNIILNSNNQEKHLININRNVVYQSNECARIKTPSKPKKISDISSSRQVNKNAGNTNGKMSHKDGNNFMKMENEMNIYS 960 
WD40-rpts                                                                                      

Query      961 KISKSSTNCVEEENHFCNSNYHDGDFHKGDHHNDDFHKGDHHNDDFHKGDHHNGPFHKHRYYNFNNYPYNDGDTHYSSEN 1040
WD40-rpts                                                                                      

Query     1041 GSSIDMGDEDNILIAEWKIERKFLKSRKFYIKNGDNICKNCKEILKKDVLEHFEKFELNYDIPRKNIKLNEEEIYNSLIK 1120
WD40-rpts                                                                                      

Query     1121 DIYIMYKEKKCPLNILLLLQEISDKDLEMYMNKFQPIVCFFEKRFLQDINEHLNNLYKIINICKQLFDNINLILKTNISN 1200
WD40-rpts                                                                                      

Query     1201 EQINKLYDNILFCLNTFKSFYELQKHLNIFLLLIELLLFISKNIFFENFPHYKETFSNYKNIEILKNYNFDNNQKINFNF 1280
WD40-rpts                                                                                      

Query     1281 FDNHLHSNHFKTHNLYIKLNKIKYNLIFILKSFSQNNNLHHLYNFAILNVPENTFNYFTLPKIYNKKMYTLHKTISYFND 1360
WD40-rpts                                                                                      

Query     1361 SMYKDYIHLHPFYISTCDKYAFLNITKYYQCKKSFKLLQKKSLKINLYPLDVLNIVVGKRKLNKYKTALSKNVFYIFTRS 1440
WD40-rpts                                                                                      

Query     1441 DQNLNITSLKVKYPSFKKNMLKSKKEDITSSNICVLKCTNLESYFPNTNNINLKIQTLCNSIIASFEPDMCFILQA 1516
WD40-rpts                                                                                  

1 WD40-repeats found in QUERY=EG_PFI0395w (Len=1516):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    37-89       2.82  231.17  0.04670       10.0%     40.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-89     CDNIYNVELFSTHNSMHKLFRKCINDELNKVYISNNNSYICVTTKTGSMYILN

   WD40 Template    TGECLRTLSGHTSG-------------VTSVSFSPDGKRLVSGSEDGTIKVWD