Input parameters:

  Query = EG_PFI0275w (Len=1220)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0275w, Len=1220):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKDLVDEPISLKFCYGINNSLSSVHIVERTNKNKEDKNNVKNIKSVDSNGRDDHTYDENIYPFNNNDEKKNTKHIIYSS 80  
WD40-rpts                                                                                      

Query       81 DNNIVLLDGKKQILFRGHFNKISNVIKSYNNEYILSCDKGLNSFIILWKINETSFLDPIKKFYYNCEENEKKRTHIYNNK 160 
WD40-rpts              (__________________WD 1_________________)                               

Query      161 KKNQDEYDINQINDNTIDNSSENGDAINNNVGYECIDISHDNRYICALTEEKIYIKSNTKYDDETGEKDKNETKTKNKQD 240 
WD40-rpts                         (___________________WD 2__________________)   (______________

Query      241 TLIKRNKGNKKNDIYFQYIIIFDINSIDHPIVCTDKIFGKDKQTKIRFNKKYEIISNSSSKLYIYNFEKKYRQISHYSPS 320 
WD40-rpts      __WD 3________________)(____________________WD 4___________________)        (___

Query      321 LYKSNKINEQFIFTDTCFVENTTTLLTGTTNGYIIVWDYSSIFINKTKHNIKQREYQKFLEISKNVSINILHSYGDFIIL 400 
WD40-rpts      _______________WD 5__________________)(________________________WD 6_____________

Query      401 GLSDGSVKVFDKELKCYAWFENDQIGSIKSISFQLCDFKKDFFLWKPFIIFSDKNIIKKIYPNSFNNQNNTIHQDQDVLY 480 
WD40-rpts      __________)   (_________________WD 7________________)                           

Query      481 KTNHDSPYIHTPTFNDPIPDKYYHNKDELYINENGVYKEKSIININNSEVFSEGSKESTITNNSKRDKKTCMDTQHINQI 560 
WD40-rpts           (_________________WD 8________________)   (_________________WD 9___________

Query      561 NYMSSNQMNNTQTNRIVLHFNSSRISCICVNPINNENIIYIGNEYGLIEIFDFEKNEKVHSIYLKEKEIVSMTFTNNGKI 640 
WD40-rpts      _____)(____________________WD10____________________)   (_________________WD11___

Query      641 LCVGCKCGFVHLINSLTFEIFFNSKDMKYEIKYLYFSEDDKIFISSAIHANIIIYKNDSEDIYDWKYAYKISNKNNNNNN 720 
WD40-rpts      _____________)   (_________________WD12________________)                 (______

Query      721 NNITFNDLHIVTQSLSQNIYNIVAITDNRYIIFHYYNFKNNTVNICYMNIEQIYVPTCISGNLFFYNRNIICICNDGSKL 800 
WD40-rpts      ____________WD13__________________)                                             

Query      801 RYMDLETKKIIKTIHLPFKDKKVQKMLPLVINEHKFNNNNNIIFDIDKEQNNTIKYQNHFDKRNIFLFVLNEKMIVFTQT 880 
WD40-rpts             (_________________WD14________________)                                  

Query      881 PIDANCLRYIGGIICSGNIKDVISKKNNIFILSKNKIFYYQIHTNILKNSIDIQNNSLQTFIEQIGGTKSPMYNQIMDSF 960 
WD40-rpts                                                                                      

Query      961 YYCEIQKNKYEKKKEKYNIKKLLNILSIEYIFASINIFLSKFEIQNIIQEYHFYYKYVINVLKQNKDSINHVINVQDGQL 1040
WD40-rpts                                                                                      

Query     1041 INFKTDDDILLNNMYFLQTNHTKDISGLNISNSEKSILAKNSMPKNLKKEDSDSYTNNINQINHNNITKENQEDFQNTDI 1120
WD40-rpts                                                                                      

Query     1121 TKECENIYFNINAFIYTYFNYITEENTDTEKIIEDIISYYKNDNKKEKLSFSDLLNILNNNGEIMDQMEFKRIFQIFTKK 1200
WD40-rpts                                                                                      

Query     1201 DESFDENDFLNMDTLKEMIE 1220
WD40-rpts                          

14 WD40-repeats found in QUERY=EG_PFI0275w (Len=1220):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    89-129      5.89  357.99  0.00093       20.0%     53.18
  WD 2:  Seg 11   180-222      4.04  281.60  0.00994       12.5%     39.94
  WD 3:  Seg 14   226-263      3.27  249.76  0.02650       12.5%     37.50
  WD 4:  Seg 17   264-308      4.82  313.63  0.00369       10.0%     41.76
  WD 5:  Seg 22   317-358      6.70  391.53  0.00033       25.0%     41.83
  WD 6:  Seg 25   359-411      3.59  262.89  0.01770       22.5%     40.90
  WD 7:  Seg 29   415-453      3.29  250.72  0.02572       12.5%     33.46
  WD 8:  Seg 34   486-524      3.05  240.44  0.03522        5.0%     19.71
  WD 9:  Seg 37   528-566      3.16  245.02  0.03063        5.0%     12.45
  WD10:  Seg 40   567-612      5.69  349.79  0.00120       22.5%     49.35
  WD11:  Seg 44   616-654      7.14  409.60  0.00019       20.0%     57.90
  WD12:  Seg 48   658-696      6.92  400.33  0.00025       17.5%     57.18
  WD13:  Seg 53   714-755      3.85  273.66  0.01270       10.0%     43.78
  WD14:  Seg 62   808-846      5.02  322.10  0.00284        7.5%     35.30

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-129    -G--K-----KQ--IL----FRGH-------------FNKISNVIKSYNNEY--ILSCDKGLNS----FIILWK
   WD 2  180-222    -S--S-----EN--GD----AINN-------------NVGYECIDISHDNRY--ICALTE--EKIYIKSNTKYD
   WD 3  226-263    -G--E-----KD--KN----ETKT-------------KNKQDTLIKRNKGNK--KNDIY---FQ----YIIIFD
   WD 4  264-308    IN--SIDHPIVC--TD----KIFG-------------KDKQTKIRFNKKYEI--ISNSSS--KL----YIYNFE
   WD 5  317-358    YS--P-----SLYKSN----KINE-------------QFIFTDTCFVENTTT--LLTGTT--NG----YIIVWD
   WD 6  359-411    YS--S-----IF--IN----KTKHNIKQREYQKFLEISKNVSINILHSYGDF--IILGLS--DG----SVKVFD
   WD 7  415-453    -K--C-----YA--WF----ENDQ-------------IGSIKSISFQLCDFK--KDFFLW--KP----FIIFSD
   WD 8  486-524    -S--P-----YI--HT----PTFN-------------DPIPDKYYHNKDELY--INENGV--YK----EKSIIN
   WD 9  528-566    -S--E-----VF--SE----GSKE-------------STITNNSKRDKKTCM--DTQHIN--QI----NYMSSN
   WD10  567-612    QM--N-----NT--QTNRIVLHFN-------------SSRISCICVNPINNENIIYIGNE--YG----LIEIFD
   WD11  616-654    -N--E-----KV--HS----IYLK-------------EKEIVSMTFTNNGKI--LCVGCK--CG----FVHLIN
   WD12  658-696    -F--E-----IF--FN----SKDM-------------KYEIKYLYFSEDDKI--FISSAI--HA----NIIIYK
   WD13  714-755    KNNNN-----NN--NN----ITFN-------------DLHIVTQSLSQNIYN--IVAITD--NR----YIIFHY
   WD14  808-846    -K--K-----II--KT----IHLP-------------FKDKKVQKMLPLVIN--EHKFNN--NN----NIIFDI

   WD40 Template    TG--E-----CL--RT----LSGH-------------TSGVTSVSFSPDGKR--LVSGSE--DG----TIKVWD